Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0280 ATGGGCTGCTGTAGTTGCTTTGGGCTCTTCAGAAGATTCAGACGTCGAAGGGGAAAGGTTGgcatcaaacacaatcaatctcaagTGCCATTGTTGGATGAAGAcagagaagatgaagatggcTCATCTAATGGTGATGTTACTGACACCTTCTTCAGTGGAGATGATAGTGAAGTGCCAATTCGTGCCAGAAGTTCTGAGGAAATTTTGAAGTTGCGAGAAGAGAATGATCTGATTTGTAGGAAGTTTCCTGTTAAGGAGACTAACAAAGTTGTACGCATGGAGGATGAAAATGGTAACAAGATGGTAAATGAATATGTTCGTGAGTATAGGATTGGTTCTGGTAGCTATGGAAAAGTGGTTCTATACCGAAGCAGTGTGGATGGAAAGCATTACGCCATCAAGGCCTTTCATAAGTCCCATTTACAGAAGCTGCGAGTTGCACCCGCAGAGACTGCAATGATGGATGTTCTGCGTGAGGTACTCATTATGAAAATGTTAGAACATCCTAATATAGTTAATCTCATTGAGGTGATTGATGACCCAGAATCTGATCACTTCTACATGGTACTTGAATATGTAGAAGGAAAATGGGTTTGCGAGGGTTCAGGTCCTCCTTGTGGCTTAGGTGAAGAGACTGCAAGGAAATACATGCGAGATATAGTTTCGGGATTAAGATATCTTCATGCTCATAATATAGTGCATGGAGATATTAAGCCTGATAATCTGTTGGTTACTCGACATGGTACAGTAAAGATTGGGGATTTCAGTGTCAGCCAGGCGATTGAGGATGATAATGATGAGCTTCGCCGATCACCCGGCACTCCTGTTTTCACTGCTCCAGAATGTTGTTTAGGTCTTACCTATAATGGTAAAGCTGCAGACACATGGGCAGTAGGAGTTACTTTGTACTGTATGATCTTGGGTCAATACCCATTTCTGGGAGACACACTTCAAGATACGTATGACAGAATAGTCAATAATCCTTTAGAACTCCCAGATAATTTGAACCCGCAGATAAGGAACTTACTAGAAGGACTACTTTGCAAAGACCCGAACAATCGGATGACATTGGGTGATGTTGCAGAGCATAGCTGGATTGTTGGAGATGATGGGCCAATTCCTGAGTATTTGTGCTGGTGCAAACGCAAGAGTTTAGAAGGGGAAGATTTATATTGCAACAATATACTTTCTTAA 1197 0.4043 MGCCSCFGLFRRFRRRRGKVGIKHNQSQVPLLDEDREDEDGSSNGDVTDTFFSGDDSEVPIRARSSEEILKLREENDLICRKFPVKETNKVVRMEDENGNKMVNEYVREYRIGSGSYGKVVLYRSSVDGKHYAIKAFHKSHLQKLRVAPAETAMMDVLREVLIMKMLEHPNIVNLIEVIDDPESDHFYMVLEYVEGKWVCEGSGPPCGLGEETARKYMRDIVSGLRYLHAHNIVHGDIKPDNLLVTRHGTVKIGDFSVSQAIEDDNDELRRSPGTPVFTAPECCLGLTYNGKAADTWAVGVTLYCMILGQYPFLGDTLQDTYDRIVNNPLELPDNLNPQIRNLLEGLLCKDPNNRMTLGDVAEHSWIVGDDGPIPEYLCWCKRKSLEGEDLYCNNILS 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0280 398 ProSiteProfiles Protein kinase domain profile. 106 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g0280 398 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 1 390 - -
Sto12g0280 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Sto12g0280 398 ProSitePatterns Protein kinases ATP-binding region signature. 112 135 IPR017441 GO:0005524
Sto12g0280 398 Pfam Protein kinase domain 106 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g0280 398 Gene3D Transferase(Phosphotransferase) domain 1 207 374 - -
Sto12g0280 398 SMART serkin_6 106 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g0280 398 Gene3D Phosphorylase Kinase; domain 1 100 202 - -
Sto12g0280 398 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 1 390 - -
Sto12g0280 398 MobiDBLite consensus disorder prediction 28 57 - -
Sto12g0280 398 CDD STKc_LKB1_CaMKK 112 367 - -
Sto12g0280 398 SUPERFAMILY Protein kinase-like (PK-like) 97 379 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0280 Sto-Chr12 1702359 1706403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0280 112 373 CBL-interacting serine-threonine protein kinases AT5G10930 32.707 1.09e-42 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Sto12g0280 Pkinase 1e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0280 K00908 - gmx:100776013 612.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0280 12 1702359 1706403 Sto12g0280 12 1702359 1706403 ECH