Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0269 ATGGAAGATAAGGAGGAAGGATCAACTGGATCGGCTAGATCGAGAAGCGGAGTGAAGAGCATGATGGCAACAGATCAGTTTTATCGGAAGGATCCTCTGTATCTTCATCCAACCGATAACACTGGAATGCATCTGGTGAATATCCAGCTGACTCTAGATAATTACCTTATCTGGAGTAAATCGATGAAACTGGCGCTGAAATCCAAGAACAAGCTTGGATTTATTGATGGAACTTGCAAGCAATCGCAAGATCCGGATTCTGATGAGTTCCTTCAGTGGAGCTTAGTTGACACGGTAGTTGTTGCGTGGATGGTGAATGCAATGACTAAAGAACTAGCGGAAGCATATATGTTTGCTTCGTCAGCTCAGGAATTATGGATGGAGCTGGAAGATAAATTCGGACAGAAGAATAGGCCGAAGATCTTCCACGTTAGGAAGCAGATTTCGTCAATTCAACAAGGAAGTGATAATCTGGCAACTTATTCGAACAAGTTGAAGAAGCTATGGGAACAACTGAATTGTCTTCGGCCTAGAAGAAAATGCAGCTGCAAAGGATGTAGTTGTGGAGCATATGACGAGTTAATGGAATCCATAGCTTCAGATAGCTTGATGGAGTTCCTGAATGGTTTGAACAGTTCATATGAGGGAGTTATAGATAATATTTTGATGATGGAACCAGAACCGCATTATAATAAAGCATACTCAATTGTGGCCAGAATTGAGATGCAAAGAGACTTGTCTAGCAATTCAGCTGCCAGTGTTGAAGCGAGTGCACTTGCAGTAAAATCACAGGGAGACGGAATGAGTAATAGACCTTTTATGAGAAAGGAAGACAAGAAGAAGCTGTATTGCGTGTATTGTAAAAGAAACGGACATTTGGAAGATGGATGTTTCAGGAAAATTGGTTATCCTGAATGGTTCAAAGCATTGAAGGATAAGAGGATACAGTCACAGGTGAATAATGTGAGCAGTAATCAAGGAGAAGACAGAGTAGTCAATCAGAAAGCAAAGGATGTGGAAGATACTTCTGTGAGTGATCTGCTTCAAGAATTGAGGAAGCTTGTGAAAGGGAAAAGTGATGACAATGCTTCAGCCTCAGTTAATGTTGCATATTTTGCAGATTTCTCAGATTTTAACTACAATCTAATCTCTGTGAATAAACTAGCTGTGGATTCAGGATTAGAATGTGTTTTTAACACATGTTTAAGTGATAAATTCTGGGGAGAAGCTATGCTAGCTGCCACATATGTTATAAACAGATTACCTAATTCAATTCTTCATTGGAAATGTCCGTTTGAAGTATTGATGAAGAAGAAACCAGATTTCACAAGGCTAAGAGTGTTTGGGTGTCTATGTTACTCTACAAACACAAATCCTCATAAAGGAAAGTTTGATAAAAGGGCCAGGAAGTGTATTTTCTTAGGAGAAGGAGATAGCAGGAAAATTGAAGAGTTGAAGTCTGACTTTCGTGTGTTTGATGCAGGAGAAGAAGAAATGCCTGAAGGAAGTGTGGATGATAGAAGTGTTGGAGATGTTGTGGAAGTTGCTGATACAGATACTCAGATTGTTGAGGAAGATCATAATATGGTTAACAGTGATAATGAAGTGTTGAGGAGAAGTGGCAGGCAAAGGTTTCATCCATCTGACGAGGAACTCATAGTTCATTACTTGCAGAACAAGATTAATTCACATCCACTACCAGCACCTATTGTTGCTGAAATAGATCTTTATAAGTTCAACCCATGGGAGCTACCTAAGAAAGCTTTGTTTGGGGAGGAGGAATGGTATTTCTTCAGTCCGAGAGATAGGAAGTACCCAAATGGGTTAAGACCAAACAGAGCAGCAGCTTCAGGATATTGGAAGGCAACAGGAACAGACAAGCCAATTCTCACTCGTGGTGGATCAAACCGCATAGGACTGAAGAAAGCTCTGGTTTTTTACTCTGGTCGTCCTCCCAAAGGAACTAAGACAGATTGGATCATGAATGAGTACAGAATGGTCGACACAACCATCAAACCATCTAGGTTTAAGGGCTCCATGAGATTGGATGATTGGGTCCTATGCCGGGTTCGATATAAAGGCTACTGGTTCAAAAATAGAGGTGAAAATCAGGAGAATAATTGTGATTCAAAATTGGTGGCTAATCTACCAACAAACACTCATTTTCAGGCTGACATGATCACAGATTATCAAATCTTAGCCTCTATTCTTGTTGATGAACCAATGCTTCACCCTGAGAACATGTCTAGCATGAACTTTAGAGGCAGCAAAGGCAACACTTTCACTTCAGTGTATGAAGATGGATTCAGTAAGGTGAATCCTCAAATGGCAATTCCTGATCATACTTCGGAGTATAGTTACTTTGACTGGCTGAAGAGAAAATCTAATGAGGATAATCAGCACGAAAATCTCATTTCCTTTAACAGGAAGCTAAATGATGAGAACACAAGTGGGGATCCTCCTAACAAGGTGCTGACCAATACTGATAACAACTGCTATAACCAAAATCAGTCTCATGACATCATTCTCAATGAGAACACACCAGATTCCAGCATCAATCTTCAAGAACTGAATGAATTAGCCTATACAGGAAGGTACATGCATTGA 2607 0.402 MEDKEEGSTGSARSRSGVKSMMATDQFYRKDPLYLHPTDNTGMHLVNIQLTLDNYLIWSKSMKLALKSKNKLGFIDGTCKQSQDPDSDEFLQWSLVDTVVVAWMVNAMTKELAEAYMFASSAQELWMELEDKFGQKNRPKIFHVRKQISSIQQGSDNLATYSNKLKKLWEQLNCLRPRRKCSCKGCSCGAYDELMESIASDSLMEFLNGLNSSYEGVIDNILMMEPEPHYNKAYSIVARIEMQRDLSSNSAASVEASALAVKSQGDGMSNRPFMRKEDKKKLYCVYCKRNGHLEDGCFRKIGYPEWFKALKDKRIQSQVNNVSSNQGEDRVVNQKAKDVEDTSVSDLLQELRKLVKGKSDDNASASVNVAYFADFSDFNYNLISVNKLAVDSGLECVFNTCLSDKFWGEAMLAATYVINRLPNSILHWKCPFEVLMKKKPDFTRLRVFGCLCYSTNTNPHKGKFDKRARKCIFLGEGDSRKIEELKSDFRVFDAGEEEMPEGSVDDRSVGDVVEVADTDTQIVEEDHNMVNSDNEVLRRSGRQRFHPSDEELIVHYLQNKINSHPLPAPIVAEIDLYKFNPWELPKKALFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILTRGGSNRIGLKKALVFYSGRPPKGTKTDWIMNEYRMVDTTIKPSRFKGSMRLDDWVLCRVRYKGYWFKNRGENQENNCDSKLVANLPTNTHFQADMITDYQILASILVDEPMLHPENMSSMNFRGSKGNTFTSVYEDGFSKVNPQMAIPDHTSEYSYFDWLKRKSNEDNQHENLISFNRKLNDENTSGDPPNKVLTNTDNNCYNQNQSHDIILNENTPDSSINLQELNELAYTGRYMH 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0269 868 Pfam Retrotransposon gag protein 123 211 IPR005162 -
Sto12g0269 868 Gene3D NAC domain 548 697 IPR036093 GO:0003677|GO:0006355
Sto12g0269 868 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 544 837 - -
Sto12g0269 868 Pfam No apical meristem (NAM) protein 544 666 IPR003441 GO:0003677|GO:0006355
Sto12g0269 868 PANTHER NAC TRANSCRIPTION FACTOR 56 544 837 - -
Sto12g0269 868 ProSiteProfiles NAC domain profile. 539 693 IPR003441 GO:0003677|GO:0006355
Sto12g0269 868 SUPERFAMILY NAC domain 544 693 IPR036093 GO:0003677|GO:0006355
Sto12g0269 868 Pfam gag-polypeptide of LTR copia-type 36 80 IPR029472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0269 Sto-Chr12 1637780 1645144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0269 544 693 NAC Transcription Factor Family AT1G61110 69.620 5.09e-71 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto12g0269 NAM 6.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0269 - - gmx:100817193 445.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0269 12 1637780 1645144 Sto12g0269 12 1637780 1645144 ECH