Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0261 ATGTTTCACACTCCTTCTCCTCCCACTAGTTCTTCTTCTCCTGCACAAGCACAAGTGGTTGCTAGCCCTTGTGCGGCCTGCAAGATTCTGAGACGAAGATGCGCTGAGAAATGCGTATTGGCTCCCTATTTCCCTCCCACTGACCCAGCCAAGTTCACCATTGCCCATCGAGTCTTCGGCGCCAGCAACATCATCAAGTTCTTGCagGAAGTTCCGGAGTCACAAAGAGCAGATGCAGTGAGCAGTATGGTGTACGAGGCAAGTGCGAGAATAAGAGATCCGGTGTACGGATGTGCGGGTGCGATCTGCCATCTACAGAAGCAAGTGAATGAGCTTCAAGCTCAATTGGCAAAGGCACAAGCAGAGGTTGTGAAGATGCAATTGCAGCAAGCCAATATGGTGGCTCTTATTTGCATGGAAATGTCTCAGACCACTCATACTACTCCTCCCAGTAATAATATCAATGAACCTGATCATCATTCTTCTTCACCAAAACCTTCTCTCGCTTTAGATGATCATACTATCACCGCCAATCTCAACTTCTATGACGATTACACTGCAACCTCCCTCAACTCTTTCTGGGAACAGCCTCTTTGGACATGa 603 0.4776 MFHTPSPPTSSSSPAQAQVVASPCAACKILRRRCAEKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQEVPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVNELQAQLAKAQAEVVKMQLQQANMVALICMEMSQTTHTTPPSNNINEPDHHSSSPKPSLALDDHTITANLNFYDDYTATSLNSFWEQPLWT 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0261 200 MobiDBLite consensus disorder prediction 145 169 - -
Sto12g0261 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 8 195 - -
Sto12g0261 200 MobiDBLite consensus disorder prediction 145 162 - -
Sto12g0261 200 Coils Coil 102 129 - -
Sto12g0261 200 ProSiteProfiles LOB domain profile. 22 123 IPR004883 -
Sto12g0261 200 Pfam Lateral organ boundaries (LOB) domain 23 120 IPR004883 -
Sto12g0261 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0261 Sto-Chr12 1574497 1575216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0261 18 200 AS2 family AT1G07900 60.656 1.57e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Sto12g0261 LOB 1.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0261 - - gmx:100819336 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0992 7 7943649 7945198 Sto12g0261 12 1574497 1575216 CCT
Sto12g0261 12 1574497 1575216 Sto12g0261 12 1574497 1575216 ECH