Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0257 ttgaaactgaTCGGTGAGGCGACCTCAATTTCATTTGTATGGATGGATCCTTCAAGTGGACAGCACCAGCAAATGCCTAGCCAGACACTGGAGAACATGTTAGGTTGTTCAAAGGCACAGAATCAGGAGAGGAAGCCAAGGCCACAGCCAGAACAAGCCCTGAAATGCCCAAGATGTGACTCAACCAACACCAAATTCTGTTACTACAACAATTACAGCCTTTCTCAGCCAAGATACTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGAACCCTGAGGAACGTTCCAGTGGGTGGAGGGTGCAGGAAGAACAAGAGGtcctcttcatcttcatcatccaaAAGAGCTCAAGCTCAAGATCAAACACTCACATCCACCAATTCCAACCCACTCTTCACTTCCCTCCCTCCATTGTCATATGACTCCACCAGCAGTGACCTCACCCTCGCATTAGCTAGGCTCCAAAAGCAATCCTGTGGACAAATGGGTTATGATGATCACGATTTCTCTATTTTGGGGAATCCTCTTGCAAATCCCTCTTGCACAAACACTGGGTTTTTAGATGCACTTCGCAGTGGGTTTCTTGAAAACCAGTGTAATAATCTTCAGAGTATGTACTATGGATATGGAAATGGGGACTTGGGAGAGGTGGATAATGGCAATAACAATAAAGCTTGTGGGGTTAGTGAAGAGATGATGATGTTTCCGTATGATCAAGAAGTGAGTAATGCCACAACTCAAGCAGTGACCGTCACTACCATGAAGCAAGAAATTTGCAGTGGCAGAGAACAAGGTGAAGCCAATAAGGTTTTGTGGGGTCTTCCATGGCAGATGAATGGAGACACGAGCATGGGTGAAGTTGATTCAGGAAGAGCAAATTGGAATAATGGTTTCACTTCATCTTGGCATGGGCTTCTTAATAGTCCCCTAATGTAA 942 0.4395 LKLIGEATSISFVWMDPSSGQHQQMPSQTLENMLGCSKAQNQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSKRAQAQDQTLTSTNSNPLFTSLPPLSYDSTSSDLTLALARLQKQSCGQMGYDDHDFSILGNPLANPSCTNTGFLDALRSGFLENQCNNLQSMYYGYGNGDLGEVDNGNNNKACGVSEEMMMFPYDQEVSNATTQAVTVTTMKQEICSGREQGEANKVLWGLPWQMNGDTSMGEVDSGRANWNNGFTSSWHGLLNSPLM 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0257 313 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 21 312 - -
Sto12g0257 313 Pfam Dof domain, zinc finger 52 108 IPR003851 GO:0003677|GO:0006355
Sto12g0257 313 MobiDBLite consensus disorder prediction 105 132 - -
Sto12g0257 313 ProSiteProfiles Zinc finger Dof-type profile. 54 108 IPR003851 GO:0003677|GO:0006355
Sto12g0257 313 MobiDBLite consensus disorder prediction 99 132 - -
Sto12g0257 313 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 21 312 IPR045174 GO:0003700|GO:0006355
Sto12g0257 313 ProSitePatterns Zinc finger Dof-type signature. 56 92 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0257 Sto-Chr12 1541218 1542716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0257 52 313 C2C2-Dof Transcription Factor Family AT2G28510 43.321 1.74e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto12g0257 zf-Dof 6.6e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0257 - - gmx:100799737 426.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0995 7 7992800 7994384 Sto12g0257 12 1541218 1542716 CCT
Sto12g0257 12 1541218 1542716 Sto12g0257 12 1541218 1542716 ECH