Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0252 ATGTCCAGAAAGCTACGGTTCTTCAAGGATCAAATCAATAAAGCTGGTCTAATGTCTTCTCCTCAACCTGTCTTGCAACCTGATCTTGAGTTGGAGGAACTAGAGataCAACTTGCTGAGCATGAACATGAGCTAAATGAAATGAACTCTAATGGTGAGAAACTCAGGCAGTCATATAATGAGCTCCTGGAGTTCAAGATTGTATTGCAAAAGGACACAAGGTCTGGACCGCCAAGTCAATctggtttaagatttatctgTGGGATAATTTGTAAATCCAAAGTTCTTCGGTTTGAAAGGATGTTGTTTCGTGCTACAAGAGGCAATATACTTTTCAACCAGGCCCCGGCTGATGAAGAAATCATGGATCCTGTTTCAACGGAGATgATTGAGAAAACAGTGTTCGTTGTGTTTTTCTCTGGGGAGCAGGCAAGAACAAAGATTCTGAAAATCTGTGAGGCATTTGGTGCAAATTGTTACCCTGTTCCTGAAGATATACTAAAGCAGAGGCAAATAACTAGGGAGGTTTCATCACGTCTTGTTGACTTAGAAGCAACTTTGGATGCTGGTCTCAGGCACCGGAATAAGGCTCTTGCTTCCATAGGGGGTCACCTAGCAAAATGGATAAATATGGTAAAAAGAGAGAAGGCTGTGTATGATACACTCAACATGCTTAACTTTGATGTCACAAAAAAATGCCTTGTTGGGGAGGGATGGTGCCCAATATTTGCAAaaacacagATTCAAGAAGCCCTGCATCGTGCAACTTTTGATAGTAGTTCTCAAGTCGGCGTAATCTTTCATCCAATGGATTCAGTGGAATCACCACCTACTTATTTTAGAACCGACCGTTTCACAAGCGCATATCAGGAAATTGTTGATGCATATGGTGTTGCTAGATACCAAGAAGCAAATCCTTCAGTTTACACAGTAATTACATTCCCATTTCTTTTTGCGGTGATGTTTGGGGACTGGGGTCATGGAATTTGCCTGTTGCTGGGAGCATTAGTTCTTATAGCACGTGAAAGCAAGCTAAGCACACAGAAACTTGGAAGCTTTATGGAGATGCTATTTGGAGGGCGCTATGTCCTTCTTTTGATGtcattattttcaatatattgtGGGCTCATCTACAATGAATTCTTCTCTGTTCCTTTTCACATTTTCGGTGCATCTGCTTACAAATGTCGAGATATTTCATGCAGGGATGCACACACTGCTGGCTTACTCAAATACCAAGATCCATACCCATTTGGTGTGGATCCCAGCTGGCGGGGAAGCCGTTCAGAGTTGGCTTTTCTGAACTCTCTCAAGATGAAGATGTCCATTCTTTTGGGTATAGCACAGATGAACTTAGGAATTATATTAAGTTACTTCAATGCACGTTTCTTCAGCAACTCACTGGATATAAGGTACCAGTTTGTGCCGCAGATGATATTCCTTAACAGTCTATTTGGGTATCTTTCCCTTCTTATTATTGTTAAGTGGTGTACTGGCTCTCAAGCGGACCTGTATCATGTAATGATATACATGTTTTTAAGCCCCACTGACAACCTTGGTGAGAATCAGTTGTTCTGGGGCCAAAGGCCACTTCAGATTGTGTTATTGCTTTTGGCGCTAATTGCAGTTCCATGGATGCTCTTTCCAAAGCCTTTTCTATTAAAGAAGCTTCAAACAGAGAGATATCAAGGACGTGCCTATGATAGGCTTAATACATCTGAGATAGATCTTGAGGTCGAACCAGATTCTGCTAGGGCCAGGCAACATCATGAGGAATTCAATTTTAGTGAGGTCTTTGTTCACCAAATGATCCATTCCATTGAGTTTGTTCTTGGTGCAGTTTCAAATACAGCGTCATATCTTAGACTCTGGGCATTAAGCTTGGCTCACTCAGAACTTTCTACTGTTTTCTATGAGAAAGTCCTCCTTCTTGCTTGGGGGTATGACAATCTCGTCATTCGGTTAGTGGGCCTTGCTGTTTTTGCTTTTGCAACTGCCTTTATACTACTAATGATGGAGACCCTCAGTGCTTTCCTTCATGCCCTGCGTCTTCACTGGGtagaatttcaaaataaattctaCCATGGTGATGGCTACAAGTTCAGACCATTCTCCTTTGCCTCCTTAGCAGACGATGATGATTGA 2145 0.4098 MSRKLRFFKDQINKAGLMSSPQPVLQPDLELEELEIQLAEHEHELNEMNSNGEKLRQSYNELLEFKIVLQKDTRSGPPSQSGLRFICGIICKSKVLRFERMLFRATRGNILFNQAPADEEIMDPVSTEMIEKTVFVVFFSGEQARTKILKICEAFGANCYPVPEDILKQRQITREVSSRLVDLEATLDAGLRHRNKALASIGGHLAKWINMVKREKAVYDTLNMLNFDVTKKCLVGEGWCPIFAKTQIQEALHRATFDSSSQVGVIFHPMDSVESPPTYFRTDRFTSAYQEIVDAYGVARYQEANPSVYTVITFPFLFAVMFGDWGHGICLLLGALVLIARESKLSTQKLGSFMEMLFGGRYVLLLMSLFSIYCGLIYNEFFSVPFHIFGASAYKCRDISCRDAHTAGLLKYQDPYPFGVDPSWRGSRSELAFLNSLKMKMSILLGIAQMNLGIILSYFNARFFSNSLDIRYQFVPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDNLGENQLFWGQRPLQIVLLLLALIAVPWMLFPKPFLLKKLQTERYQGRAYDRLNTSEIDLEVEPDSARARQHHEEFNFSEVFVHQMIHSIEFVLGAVSNTASYLRLWALSLAHSELSTVFYEKVLLLAWGYDNLVIRLVGLAVFAFATAFILLMMETLSAFLHALRLHWVEFQNKFYHGDGYKFRPFSFASLADDDD 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0252 714 Pfam V-type ATPase 116kDa subunit family 1 706 IPR002490 GO:0033179|GO:0046961|GO:1902600
Sto12g0252 714 PANTHER VACUOLAR PROTON ATPASES 78 714 IPR002490 GO:0033179|GO:0046961|GO:1902600
Sto12g0252 714 PANTHER VACUOLAR PROTON ATPASES 1 72 IPR002490 GO:0033179|GO:0046961|GO:1902600
Sto12g0252 714 Coils Coil 31 58 - -
Sto12g0252 714 PIRSF ATP6V0A1 70 714 IPR026028 GO:0000220|GO:0046961
Sto12g0252 714 PIRSF ATP6V0A1 1 76 IPR026028 GO:0000220|GO:0046961
Sto12g0252 714 PANTHER VACUOLAR PROTON ATPASE A1 1 72 - -
Sto12g0252 714 PANTHER VACUOLAR PROTON ATPASE A1 78 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0252 Sto-Chr12 1517886 1524489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0252 1 707 Primary Pumps ATPases(2) AT2G28520 77.480 0.0 1172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0252 K02154 - gmx:100793301 1237.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g0999 7 8054670 8055916 Sto12g0252 12 1517886 1524489 CCT
Sto12g0252 12 1517886 1524489 Sto12g0252 12 1517886 1524489 ECH