Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0244 ATGTTAGATCTTAATCTCAATGCGGATTCGATCGATTCGGCTCAGAATGAAAGCTCGGTCATGCTTTTCGACAAATTTCCTGAAGCTTCCGGGAATCAAATGGCGGAATCGGGGACCTCCAATTCCTCTATTGTCAATGCCGACGGGTCTAGCACTGGAGGAGGCGATGATGACTCCTGCTCTACTCGCACTGGCGACGTATTCACCATCAATTTTGATATCCTTAAGGTGGAAGGCGGGAACGACGTCGCAACCAAGGAGCTATTTCCTGGCAGTGGAGCAAAAGGAGTAGACAGCGAGTCTGACAATTGGCAGGGACAGTCCTCGTCGTCCTTACCATCAAGGAAGAGCTGGATGGATCTCTCATTTGATAATCAAGGTGGCAGCGGAGAAATGAAGATGATTCAACTTCAGCAACAACCTCAGCAGCCAGTGAAGAAGAGCAGGAGGGGTCCAAGGTCTCGGAGCTCCCAGTACAGAGGAGTCACCTTCTACCGGAGGACTGGAAGATGGGAATCACATATCTGGGATTGCGGGAAACAAGTCTATTTAGGTGGATTTGACACTGCACATGCCGCTGCtcgAGCCTATGATCGAGCTGCTATTAAGTTCAGGGGAGTTGATGCTGACATCAATTTCAACCTCAGTGATTACGAGGAGGATCTTAAACAGATGAAGAATCTTACCAAGGAGGAGTTCGTTCATATACTTCGTCGCCAGAGTACTGGTTTCTCAAGGGGGAGTTCAAAATACCGAGGAGTAACACTGCACAAATGTGGCCGTTGGGAAGCTCGGATGGGACAATTCCTTGGCAAAAAGTATATATATCTTGGGCTGTTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGATAAAGCGGCTATTAAGTGTAACGGAAGGGAAGCAGTTACTAACTTCGAACCAAGTGCATATGAAGGGGAGATGAACTCTGAAGCAATTAATAAAGATAGCAGTCACAATCTTGACCTCAATTTGGGCATAGCAACCCCAGGTAATGGTCCCCATGAAAACAGGGGCCATCTTCAGTTCCAGTCTGTTCCTTACAACGTGCATGCCGGAAGAAGTTCAAGGATAGAGACCAACACTGATTCAGTAATTGGAGATCCATCCATGAAAAGGCTGGTAGTAACTGATGATCGTCCTTCTGTATGGAATGGCATATATCCTAGTTTCTTTCCTAATGAGGAAAGAGCAGAGAGAATCAGTACAAGTCCTTCTTCACAAGGATTCCCCAACTGGGCCTGGCAAACGCATGGGATGGTCAGTGCTAGTGCTTCCCCAGTACCACAGTTCTGTACTGCAGCATCATCAGGATTCTCAATTTCATCCACTGCCACCTTTCCAGCAAAATCTATGAACTCACTTCCCAAGTCTCTCTCTTTTACTTCATCCACCACAGCTGCCTCCAACACTACAGCTCCATATTATTACCAGATGAAGTACCCTCAGGCTCCACCATAG 1482 0.4703 MLDLNLNADSIDSAQNESSVMLFDKFPEASGNQMAESGTSNSSIVNADGSSTGGGDDDSCSTRTGDVFTINFDILKVEGGNDVATKELFPGSGAKGVDSESDNWQGQSSSSLPSRKSWMDLSFDNQGGSGEMKMIQLQQQPQQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLSDYEEDLKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPSAYEGEMNSEAINKDSSHNLDLNLGIATPGNGPHENRGHLQFQSVPYNVHAGRSSRIETNTDSVIGDPSMKRLVVTDDRPSVWNGIYPSFFPNEERAERISTSPSSQGFPNWAWQTHGMVSASASPVPQFCTAASSGFSISSTATFPAKSMNSLPKSLSFTSSTTAASNTTAPYYYQMKYPQAPP 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0244 493 Gene3D AP2/ERF domain 157 215 IPR036955 GO:0003700|GO:0006355
Sto12g0244 493 Gene3D AP2/ERF domain 249 308 IPR036955 GO:0003700|GO:0006355
Sto12g0244 493 CDD AP2 158 216 IPR001471 GO:0003700|GO:0006355
Sto12g0244 493 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Sto12g0244 493 Pfam AP2 domain 249 299 IPR001471 GO:0003700|GO:0006355
Sto12g0244 493 MobiDBLite consensus disorder prediction 32 60 - -
Sto12g0244 493 MobiDBLite consensus disorder prediction 98 123 - -
Sto12g0244 493 MobiDBLite consensus disorder prediction 30 60 - -
Sto12g0244 493 PRINTS Ethylene responsive element binding protein signature 251 262 IPR001471 GO:0003700|GO:0006355
Sto12g0244 493 PRINTS Ethylene responsive element binding protein signature 289 309 IPR001471 GO:0003700|GO:0006355
Sto12g0244 493 ProSiteProfiles AP2/ERF domain profile. 250 307 IPR001471 GO:0003700|GO:0006355
Sto12g0244 493 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Sto12g0244 493 SUPERFAMILY DNA-binding domain 249 308 IPR016177 GO:0003677
Sto12g0244 493 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Sto12g0244 493 SMART rav1_2 250 313 IPR001471 GO:0003700|GO:0006355
Sto12g0244 493 MobiDBLite consensus disorder prediction 87 123 - -
Sto12g0244 493 CDD AP2 249 309 IPR001471 GO:0003700|GO:0006355
Sto12g0244 493 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 462 - -
Sto12g0244 493 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-7 1 462 - -
Sto12g0244 493 MobiDBLite consensus disorder prediction 136 159 - -
Sto12g0244 493 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0244 Sto-Chr12 1473616 1476917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0244 73 333 AP2-EREBP Transcription Factor Family AT4G36920 67.407 1.40e-104 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Sto12g0244 AP2 2.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0244 K09284 - gmx:100777102 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g1019 7 8223835 8227347 Sto12g0244 12 1473616 1476917 CCT
Sto12g0244 12 1473616 1476917 Sto12g0244 12 1473616 1476917 ECH
Sto12g0244 12 1473616 1476917 Sto7g1019 7 8223835 8227347 ECH