Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0233 ATGTATACACACTCTAGTTCTACCCCCACATTCTCACGCGCCGCCGACTTCCCCGCCCACCTTCCCTCGCCTCCGCCAATGCATACCATCTCGCCTCCTCAGTTCCACCTAACTCCCGACCAACTCGCCGCCGTCAACGAGTTTGACTCGCTTCTCAACTCGGATTTGAGCCACAACAACAACAGTTGCAGCAGCGGCGGCGGTAGCAGCTACGGGTCGCCGAGTTCGCTGGCGAGTTATGGAACTCATCGGCGTACCTTGATGCAGAGGAGCGTGAGCAACCACTCCGTTTCTGCTCTGTTCGCCGAGTTTCTCGACTCCGACGACGGTCCGGTGCGCAGAGTTTACAGTACTGGCGATTTGCAGAGGATTAACGTGATGCAATATAGTAGCAATCATCAGTCAGATAGTCCATTGTCAAGCGAAAGTAGTATGATCATAGAAGGGATGAACAGAACAAGTCGATATAGCCCTGAGGAGAAGAAGGTCAGGATTGAGAGATATAAAACCAAGAGAAATCAGAGGAACttcaacaagaaaattaagTATGTTTGCAGGAAGACACTAGCAGACAGCAGGCCACGCATCAGAGGAAGATTTGCTAGGAATGAAGAAACAGAGAAGATTCCTGCAATTGATGAGTGGAGCAATGGCGTTGCAGAAGAAGATTTTGATGAAAAATGGGGGATTCAGATTCTCAGAAGCCTCCCCTTTTCTCTGCTTTGCGTCCAAATTAACAAGGGGATTGTTGcACTTTCATCTAAGGACGTAAGAAACATGTCTGGACGTGGAAAGGGAGGCAAGGGTTTGGGAAAAGGAGGAGCGAAACGACACCGTAAAGTCTTGCGGGATAACATTCAGGGAATCACAAAACCGGCGATTCGACGTCTGGCTCGTAGGGGAGGTGTGAAGCGTATTAGCGGCCTCATCTATGAGGAGACTCGTGGAGTTCTCAAGATCTTTCTGGAGAATGTGATTCGTGACGCAGTGACCTACACGGAGCACGCTAGGAGGAAGACTGTTACGGCTATGGACGTTGTCTATGCCCTCAAGAGGCAAGGAAGAACCCTTTACggatttgggggttag 1089 0.4876 MYTHSSSTPTFSRAADFPAHLPSPPPMHTISPPQFHLTPDQLAAVNEFDSLLNSDLSHNNNSCSSGGGSSYGSPSSLASYGTHRRTLMQRSVSNHSVSALFAEFLDSDDGPVRRVYSTGDLQRINVMQYSSNHQSDSPLSSESSMIIEGMNRTSRYSPEEKKVRIERYKTKRNQRNFNKKIKYVCRKTLADSRPRIRGRFARNEETEKIPAIDEWSNGVAEEDFDEKWGIQILRSLPFSLLCVQINKGIVALSSKDVRNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0233 362 MobiDBLite consensus disorder prediction 1 25 - -
Sto12g0233 362 PRINTS Histone H4 signature 264 275 IPR001951 GO:0003677|GO:0030527
Sto12g0233 362 PRINTS Histone H4 signature 279 298 IPR001951 GO:0003677|GO:0030527
Sto12g0233 362 PRINTS Histone H4 signature 299 319 IPR001951 GO:0003677|GO:0030527
Sto12g0233 362 PRINTS Histone H4 signature 321 335 IPR001951 GO:0003677|GO:0030527
Sto12g0233 362 PRINTS Histone H4 signature 336 348 IPR001951 GO:0003677|GO:0030527
Sto12g0233 362 PRINTS Histone H4 signature 348 359 IPR001951 GO:0003677|GO:0030527
Sto12g0233 362 SMART h44 275 349 IPR001951 GO:0003677|GO:0030527
Sto12g0233 362 PANTHER HISTONE H4 181 362 - -
Sto12g0233 362 PANTHER HISTONE H4 181 362 - -
Sto12g0233 362 CDD H4 277 360 IPR001951 GO:0003677|GO:0030527
Sto12g0233 362 ProSitePatterns Histone H4 signature. 274 278 IPR019809 GO:0000786|GO:0003677
Sto12g0233 362 Pfam CCT motif 163 203 IPR010402 GO:0005515
Sto12g0233 362 ProSiteProfiles CCT domain profile. 161 203 IPR010402 GO:0005515
Sto12g0233 362 Pfam Centromere kinetochore component CENP-T histone fold 301 355 IPR035425 -
Sto12g0233 362 Gene3D Histone, subunit A 261 362 IPR009072 GO:0046982
Sto12g0233 362 SUPERFAMILY Histone-fold 262 361 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0233 Sto-Chr12 1381192 1390017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0233 160 207 C2C2-CO-like Transcription Factor Family AT5G57660 52.083 7.13e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto12g0233 CENP-T_C 3e-07 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0233 - - lang:109352757 218.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g1060 7 8612353 8612775 Sto12g0233 12 1381192 1390017 CCT
Sto12g0233 12 1381192 1390017 Sto12g0233 12 1381192 1390017 ECH
Sto12g0233 12 1381192 1390017 Sto7g1060 7 8612353 8612775 ECH