Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0209 ATGGAGAAAGCTTGGTTACAAAATGCCCTTGTCATTCCCACCTTCATTTTCGCGATGCTTAAAATCTACAAAGGATTTCAGATAATTCAGAGCAGGAAGGCACTTGAAGAAGAAAGCACAGGCAGCCTTGACGATCTTGTTCCAGAAATCGCAGAACTAATTCTACTAAAGTCATCCGTTTTCGATTATCCCCAATTACGTCTTACATGCTCCACTTGGCGAACAATAATCGACAAGGCCATACAAGACAAGTATTATCCTCCTCATCCCTATTCTTCTCTGCTTCCTCAATTTCCATGCCTTCTTTTAAACAACCGAAAGACTAATAAAGTGTTGAATCTAAGCGAAGACAAAGTGTACACTAACACTAGTAGTACCATGAGAGGGTGTGAATGTGTTGGTAGAGTAGAAGGGTGGCTCGTATTCACTCGTCTCCTTTTCGATTGCTAcccttgtattttctttttcaatccaGTGTCAGGTCGTAAGATCATGctcccaccacccaccaccatcaaTCCACCTGCAACTATTAGCTTCTATCATGTGGTTGCTTCTTGTGCACCAGATTCTACAGAGTGTGTAGTGGCAGCTATTGTTTTCATCGATCCCACTGATCAATTATTAGTATTTTGTAAGATTCAAGATGAATCTTGGTCTATAATCCAAGCAGGGGATGCTCGGAGAATCAATTTTTGGAGAATAGTGTTTCATGGTAACAAGTTGTATGCAGCATCTTCTGCGGTAGATTATTTTATCAAGGTTTTCCACCTTAGTGATGCCAATAGATCACTAGTAACATGTGATCAAATAAACATGATTGGCCCCAAGCCTCATATTAAAATAGGTCGTCTAGAATATTCATATAATGGGTTCTTGTTTAGATTGGATTATGAATTTTATTCACTAGTGATAAGCCCAGAAGGAGAGGTGTTCGTCATCTTTCAAACAATAGATTTATATTATGAAGATGGTGATAAGCGAGGTTTTCCTTGGTCTCAAATAAAAGGATTTCGGGTGTTTCAGATGGATTTGAATAGGGGTAAATGGTATCGAATTAGTGATTTGGGTGATAATTTGTTCTTTGTAGATAAAATGGGTGCTAAGGTAATTTCAGCAACTGCCCTTAAGAATAACACCTCCTGGAAGCACTTAGTGCGTCCAAACTGTGTGTATTTTACATATGTTTATTTGGTGGATCCAGAGACGCGAGTTTATGCACAAGACATTGGGTGCTTCTGTTTAACAGACTCAACTAAAATGTGCGTTCTTCTTGTTTTTCACATGATTGGTTTCTACATCTATTGTTCGAAGAAGACTGATCCCAAGGCACAGGCCTTGAAAACTGCTAAAGCAGTCAAGTCAGGCCCTACCTTCAAGAAGAAGGCCAAGAAAATCCGCACATCCGTCACATTCCATCGGCCAAAGACTTTGAAAAAGGCCAGGAACCCCAAATATCCTCGTATTAGTGCTCCACCAAGAAATAAGCTTGAtcattatcaaattttgaaatacCCTCTCACCACTGAGTCAGCAATGAAGAAGATTGAAGACAACAACACTTTGGTTTTCATTGTTGACCTACGTGCTGACAAGAAGAAGATAAAGGATGCCGTGAAGAAAATGTATGACATTCAAGCCAAGAAAGTAAATACCTTGATCAGGCCTGATGGCACCAAGAAAGCTTATGTCAGACTGACTCCTGATTATGATGCCTTGGATGTGGCAAACAAGATTGGGATTATCTAA 1749 0.3831 MEKAWLQNALVIPTFIFAMLKIYKGFQIIQSRKALEEESTGSLDDLVPEIAELILLKSSVFDYPQLRLTCSTWRTIIDKAIQDKYYPPHPYSSLLPQFPCLLLNNRKTNKVLNLSEDKVYTNTSSTMRGCECVGRVEGWLVFTRLLFDCYPCIFFFNPVSGRKIMLPPPTTINPPATISFYHVVASCAPDSTECVVAAIVFIDPTDQLLVFCKIQDESWSIIQAGDARRINFWRIVFHGNKLYAASSAVDYFIKVFHLSDANRSLVTCDQINMIGPKPHIKIGRLEYSYNGFLFRLDYEFYSLVISPEGEVFVIFQTIDLYYEDGDKRGFPWSQIKGFRVFQMDLNRGKWYRISDLGDNLFFVDKMGAKVISATALKNNTSWKHLVRPNCVYFTYVYLVDPETRVYAQDIGCFCLTDSTKMCVLLVFHMIGFYIYCSKKTDPKAQALKTAKAVKSGPTFKKKAKKIRTSVTFHRPKTLKKARNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0209 582 PANTHER 60S RIBOSOMAL PROTEIN L23A-2 435 582 - -
Sto12g0209 582 Pfam Protein of unknown function (DUF295) 352 402 IPR005174 -
Sto12g0209 582 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 499 575 IPR012678 GO:0003735|GO:0005840|GO:0006412
Sto12g0209 582 Hamap 50S ribosomal protein L23 [rplW]. 502 582 IPR013025 GO:0003735|GO:0005840|GO:0006412
Sto12g0209 582 Pfam Ribosomal protein L23 502 563 IPR013025 GO:0003735|GO:0005840|GO:0006412
Sto12g0209 582 PANTHER 60S RIBOSOMAL PROTEIN L23A 435 582 IPR013025 GO:0003735|GO:0005840|GO:0006412
Sto12g0209 582 SMART fbox_2 46 85 IPR001810 GO:0005515
Sto12g0209 582 TIGRFAM uL23_arch: ribosomal protein uL23 506 582 IPR019985 GO:0003735|GO:0005840|GO:0006412
Sto12g0209 582 Pfam Ribosomal protein L23, N-terminal domain 443 492 IPR005633 -
Sto12g0209 582 ProSitePatterns Ribosomal protein L23 signature. 560 575 IPR001014 -
Sto12g0209 582 Gene3D - 463 582 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0209 Sto-Chr12 1241472 1244927 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0209 455 582 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 90.625 6.28e-62 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0209 K02893 - jre:109021970 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0209 12 1241472 1244927 Sto12g0209 12 1241472 1244927 ECH