Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0203 ATGGTTCAACAAGAAATCCGAAAAGGTCCCTGGACAGAACAGGAGGACATCAAATTGGTCTCCTTTGTTGGCTTGTTTGGAGATCGGAGATGGGATTTTATAGCAAAAGTTTCAGGTTTAAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACCTGCATCCTGGTCTCAAAAGGGGAAAGATGACACCACTAGAAGAGCGCCTTGTCCTAGAGCTTCACTCAAAATGGGGAAATAGATGGTCAAGAATTGCTCGCAAATTACCCGGGCGCACAGATAACGAGATTAAGAATTACTGGAGAACTCACATGAGAAAGATAGCCCAGGAGAAAAAGCGAGCAGCCATATCATCACCAACGTCTTCTAGTTGTCATTCCTCGCTATCATCAGAGAACCATACAGTGGATTCATATCCTACCAAAAAGACTGGAGAAGAAAGCTTTTACGACACAGGAGGTCCTAATATGACATCCAAGACAGAAACGAAGATAGGGGAAGACCAAGTAGGTGATCAGGGGTACTCTATGGATGATATATGGAAAGATATTGCTCTGTCAGAGAGCCTTATGCATCCAGTCTATGATGGGCACAGCGAAGTGGGCTGCAACTTCTCTTGTCCTCCAATGCCTTCCCCATCGTGGGAATACTCTTCAGACTCGCTGTGGGTGATGGATGAAGAGGAATCCAAAGAGATAAAATCTCGACAAACTTCCAATAGGAAGGTGGGACTTGCTCTAGGATACAGGGGCTCAGTTATTACCAAATCATCCCAAGTGAATCAATTTGGTATCCTTTGCCATGCCTTCTAA 816 0.4436 MVQQEIRKGPWTEQEDIKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPLEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKIAQEKKRAAISSPTSSSCHSSLSSENHTVDSYPTKKTGEESFYDTGGPNMTSKTETKIGEDQVGDQGYSMDDIWKDIALSESLMHPVYDGHSEVGCNFSCPPMPSPSWEYSSDSLWVMDEEESKEIKSRQTSNRKVGLALGYRGSVITKSSQVNQFGILCHAF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0203 271 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Sto12g0203 271 MobiDBLite consensus disorder prediction 114 163 - -
Sto12g0203 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Sto12g0203 271 Gene3D - 8 60 - -
Sto12g0203 271 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Sto12g0203 271 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Sto12g0203 271 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Sto12g0203 271 Gene3D - 63 127 - -
Sto12g0203 271 CDD SANT 63 106 IPR001005 -
Sto12g0203 271 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 233 IPR044676 GO:0003700|GO:0006355|GO:0043565
Sto12g0203 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Sto12g0203 271 SUPERFAMILY Homeodomain-like 5 102 IPR009057 -
Sto12g0203 271 CDD SANT 10 55 IPR001005 -
Sto12g0203 271 SMART sant 7 57 IPR001005 -
Sto12g0203 271 SMART sant 60 108 IPR001005 -
Sto12g0203 271 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 233 - -
Sto12g0203 271 MobiDBLite consensus disorder prediction 116 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0203 Sto-Chr12 1217535 1219157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0203 1 232 MYB Transcription Factor Family AT5G59780 63.675 2.42e-91 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto12g0203 Myb_DNA-binding 7.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0203 K09422 - vvi:100260318 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0203 12 1217535 1219157 Sto7g1110 7 9155210 9156679 CCT
Sto12g0203 12 1217535 1219157 Sto12g0203 12 1217535 1219157 ECH