Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0197 ATGAAGAGAGTGAGAGATGAGGATAGCTTCGACATGGGTAAATGTTTGATGTTATTATCCAAAGTTGGTGAAATGAAGAGTCGCAGCAGAGATTTGAAGAGTAGAAGTGGAGGTGGGTTTAAGTGCAAGACTTGCAGTAGGGAGTTTTCTTCATTTCAAGCACTTGGAGGGCACAGAGCGAGCCACAAGAAACCCAAGCTCACCATGATGTTGGGCTCCGACGAGTTAGCCATATCGATGATGAATAAGCGCAAGATGCATGAGTGCCATATCTGTGGGCTCGAGTTTGGGATCGGACAAGCGCTGGGAGGCCACATGAGGAAGCATAGAGCCGCCATGAACCATGGTTTGGAGCCCGCGGTTCACTTGGCCAAAGTTGATGATAATAGTAAAGGGATTCATGATATGCGTTTGGACTTGAACTTGACGCCACTGGATCAGGATGATGATTTGAAGCTTGACTTGAGGCCGCCCTtggtttattgttttatttaa 495 0.4586 MKRVRDEDSFDMGKCLMLLSKVGEMKSRSRDLKSRSGGGFKCKTCSREFSSFQALGGHRASHKKPKLTMMLGSDELAISMMNKRKMHECHICGLEFGIGQALGGHMRKHRAAMNHGLEPAVHLAKVDDNSKGIHDMRLDLNLTPLDQDDDLKLDLRPPLVYCFI 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0197 164 PANTHER CYS2-HIS2 ZINC FINGER TRANSCRIPTION FACTOR 5 164 - -
Sto12g0197 164 Pfam C2H2-type zinc finger 40 65 - -
Sto12g0197 164 Pfam C2H2-type zinc finger 87 111 - -
Sto12g0197 164 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Sto12g0197 164 Gene3D Classic Zinc Finger 38 109 - -
Sto12g0197 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 114 IPR013087 -
Sto12g0197 164 PANTHER ZINC FINGER PROTEIN ZAT5 5 164 - -
Sto12g0197 164 SMART c2h2final6 40 62 IPR013087 -
Sto12g0197 164 SMART c2h2final6 87 109 IPR013087 -
Sto12g0197 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Sto12g0197 164 SUPERFAMILY beta-beta-alpha zinc fingers 40 109 IPR036236 -
Sto12g0197 164 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0197 Sto-Chr12 1186483 1186977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0197 1 148 C2H2 Transcription Factor Family AT2G37430 42.857 4.66e-34 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto12g0197 zf-C2H2_6 2.5e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0197 - - gmx:100781211 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0197 12 1186483 1186977 Sto12g0197 12 1186483 1186977 ECH