Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0191 ATGTCTGCAGCTCTGGATATGACTCTTGATGATATCATCAAGAACAACAAAAAGTCTGGATCCGGTAACTCCAGAGGTCGTGGTCGAGGATCCGGTCCCGGTCCGGCTCGCCGCTTCCCCAACCGCGCCGCCAATCGTGCTGCACCTTATACTACTGCAAAGGCACCGGAGGCGACATGGCAGCATGATATGTTCGCAGATCAGCCTGCGGCGCCGTACGCAGCTGCAGCTCAAGGTCCTCGAGCTTCTTCCATAGAAACTGGGACCAAACTCTATATATCTAATCTGGATTACGGTGTTTCGAACGAGGATATTAAGGAATTGTTTTCTGAAGTTGGTGACTTGAAACGTTATACTATTCATTATGACAGGAGTGGCAGATCGAAGggtACAGCAGAAGTAGTCTTTTCACGGCGAACTGATGCTGTGGCTGCGGTAAAGAGATACAACAATGTCCAACTTGATGGGAAACCAATGAAGATAGAGATTGTGGGGACAAACATTGCAACACCTACTGTGGCTCCTTCTGCAAATGGTGCCGTTGGAAATTCAAATGGAGTTCCTAGAATATCATATGCGTCCTCGTTTTGTCTTTTACACAGTGGACAAGGGAGAGGTGGGGCCTTTGGAAGGCCTCGTGGTGGAAGTAGAGGGCGTGGCTCCTCCCGGAGGGGTCGAGGACGTGGAAGAGGCCGTGGAGAAAAGGTATCTGCAGAAGATCTTGATGCCGATTTGGAGAAGTATCATTCAGAGGCAATGCAAGAAAACTGA 771 0.4929 MSAALDMTLDDIIKNNKKSGSGNSRGRGRGSGPGPARRFPNRAANRAAPYTTAKAPEATWQHDMFADQPAAPYAAAAQGPRASSIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYTIHYDRSGRSKGTAEVVFSRRTDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPTVAPSANGAVGNSNGVPRISYASSFCLLHSGQGRGGAFGRPRGGSRGRGSSRRGRGRGRGRGEKVSAEDLDADLEKYHSEAMQEN 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0191 256 Gene3D - 74 239 IPR012677 -
Sto12g0191 256 CDD RRM_THOC4 89 163 - -
Sto12g0191 256 Pfam C-terminal duplication domain of Friend of PRMT1 203 251 IPR025715 -
Sto12g0191 256 PANTHER CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED 1 254 - -
Sto12g0191 256 Coils Coil 238 256 - -
Sto12g0191 256 MobiDBLite consensus disorder prediction 204 256 - -
Sto12g0191 256 SMART rrm1_1 90 162 IPR000504 GO:0003723
Sto12g0191 256 SUPERFAMILY RNA-binding domain, RBD 72 170 IPR035979 GO:0003676
Sto12g0191 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Sto12g0191 256 MobiDBLite consensus disorder prediction 1 59 - -
Sto12g0191 256 SMART FoP_duplication_2 177 256 IPR025715 -
Sto12g0191 256 MobiDBLite consensus disorder prediction 231 256 - -
Sto12g0191 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 166 IPR000504 GO:0003723
Sto12g0191 256 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0191 Sto-Chr12 1144466 1146821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0191 88 163 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 1.87e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0191 K12881 - rcu:8281889 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0191 12 1144466 1146821 Sto12g0191 12 1144466 1146821 ECH