Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0176 CTGCTTCCACATGCGGCAGGAGCAGCCACCACCATCCGGCCCGGCTCAATGTCGGATCGGGCCCGAATGGCCAAACTACCCCCTCCGGAGGCAGCCCTAAAGTGTCCCCGTTGTGAATCCACCAACACTAAATTCTGCTACTTCAACAACTACAGCCTCTCCCAACCTCGTCACTTCTGCAAGACATGCCGCCGCTATTGGACGAGAGGCGGCGCTCTCCGCAACGTCCCCGTCGGCGGTGGTTGCCGCAGAAACAAGAAGAGCAAAAGGAGCCGCTCCAAATCTCCCACCGCCGCCACCACCGACAAAAACAGTACCCTTCTCCCAAACGGCGCCGCCACGAGCTTAATGGCCTCCGGCAGCAGCGAGCTGATTGGTCAGTTACACTTACAGCAACCTTCTAACTTACCTTTCATGGCGTCGTTACAGGGCTTGGGCCGGTACGGGGGCATGGGAAACATGGGCCTGAGCTTGCGGGAGATGTTAGCCCAGACAGAGCCCATGGGCTTTCAAATGGGAGGAGGAGGAGTGGAGAACCAGTGGCGGTCCCCACAGCAATTAATCCCTAATTTCATGAATGGGTTTAATGGAGAGTCTGGTTCGTACCAATTTCAAAGTGAAGCGGCAATTAATGAAGAAGATACGAGATCTAATGTCAAATTGGAACACAATAATAATGCCCTAAATTTGTCTACATCCTCCACTACTACCTCTACTCTCCCCAATACTAATACTAATACTAATCATAATCAGTTCTATTCTTGGACTGATTTATCGGgtcttgcttcttcttccactacACACCTCTTGTTTGGATCGGACATTAATATTGGAGTCTATTTTGTACTATATGGGTTTTGTTTTGTATGA 870 0.4943 LLPHAAGAATTIRPGSMSDRARMAKLPPPEAALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSKRSRSKSPTAATTDKNSTLLPNGAATSLMASGSSELIGQLHLQQPSNLPFMASLQGLGRYGGMGNMGLSLREMLAQTEPMGFQMGGGGVENQWRSPQQLIPNFMNGFNGESGSYQFQSEAAINEEDTRSNVKLEHNNNALNLSTSSTTTSTLPNTNTNTNHNQFYSWTDLSGLASSSTTHLLFGSDINIGVYFVLYGFCFV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0176 289 ProSiteProfiles Zinc finger Dof-type profile. 33 87 IPR003851 GO:0003677|GO:0006355
Sto12g0176 289 MobiDBLite consensus disorder prediction 78 109 - -
Sto12g0176 289 MobiDBLite consensus disorder prediction 94 109 - -
Sto12g0176 289 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 6 267 IPR045174 GO:0003700|GO:0006355
Sto12g0176 289 ProSitePatterns Zinc finger Dof-type signature. 35 71 IPR003851 GO:0003677|GO:0006355
Sto12g0176 289 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 6 267 - -
Sto12g0176 289 Pfam Dof domain, zinc finger 32 87 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0176 Sto-Chr12 1046842 1047847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0176 6 271 C2C2-Dof Transcription Factor Family AT3G55370 41.259 2.01e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Sto12g0176 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0176 - - gmx:100801154 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g1156 7 9589051 9595685 Sto12g0176 12 1046842 1047847 CCT
Sto12g0176 12 1046842 1047847 Sto12g0176 12 1046842 1047847 ECH
Sto12g0176 12 1046842 1047847 Sto10g0618 10 5334412 5335598 ECH