Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0173 ATGGATGAAGACAAAGCCGCTATAATGCAGACCTCGATTGACTTGGTGAATGAAATAGCTTCGATCTCCGACTACAGGAGCACGGTCAAGAAGCACTACTGCAATTTGGCCAGAAGGTTGAAGCTCTTGACTCCTTTATTCGAAGAGATTAGGGACAGCAGGGAGTCCTTCTCTAAAGACACTTTCAAACCTTTGCTTTCCTTCAAAGAAGCTTTGGAATCCGCCAGGGAACTTCTCAGATTCGGGAGTGAAGGCAGTAAAATTTACATGGCACTagagagggaccaaattatgaATAAATACCAGGAGGTGACAGCTCAGTTAGAGCAAGCCTTGAGTGGAATTACCTATGATAATCTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTAGCCCAATTCAGAAGAGCCAAAGGAAAGGTTGATGCACCTGATGTTGAGTTGTATGAAGATCTCCTTTCACTTTATGATAAGAGCAGTGATGCATCTACAGATCCTGCTGTTCTAAGGAGATTAGCtgaaaaattgcaattgatGGGAATATCTGATCTTACACGAGAATCACTAGCTTTGCATGAAATGGTGGCAGCAAGTGGTGGTGATCCAGGGGCGAGCTTTGAGAAGATGTCGAtgctattgaaaaaaataaaggattACGTGCAAACAGAGAATCTAGTCATAGATGATAATGAAAGAGGAAAAAGCCTCTCTTCAACTAGCAGCAAGCAAGGGGCAAGTGAAAAGGGTCATCACGTTCCTGTTATCCCTGATGACTTTCGATGTCCAATTTCCCTGGAATTGATGAAGGATCCTGTAATTGTTTCCACGGGACAGACATATGAGCGTACTTGTATTGAGAGATGGTTGGAAGCAGGGCATGGGACCTGTCCAAAAACACAGCAGACCCTTACTAGTACTGTTCTCACACCAAACTATGTCTTACGAAGCCTCATAGCACAGTGGTGTGAAGCCAATGGCATAGAACCTCCAAAACGACCTAGCACTTCCCGGCCTAGTAAGTCAGCATCTGCCTGCTCACCGGCTGAGCGTAGTATGATTGAAAATCTTCTCCGCAAGCTTACATCTGGTAATGCTGACGATCAGAGATCAGCTGCGGGTGAGATCCGCCTTCTTGCAAAGCGCAATGCTGATAACCGTGTGGCCATTGCTGAAGCAGGTGCAATACCTCTTCTTGTTGGTCTCCTCTTCATACCTGACTCCCGAACTCAAGAGCATGCTGTAACAGCACTTCTGAATCTTTCCATTTGTGAGAATAACAAAGGAAGTATCGTATCTTCTGGGGCAGTTCCTGGTATAGTTCATGTGCTCAGGAAGGGTAGCATGGAAGCTCGGGAAAATGCAGCAGCGACACTTTTCAGCCTTTCAGTCATTGATGAAAATAAGGTTACTATTGGATCTTCTGGAGCCATACCACCACTTGTGACACTGCTGAGCGAGGGTACCCAAAGGGGTAAAAAAGATGCTGCAACAGCACTGTTCAATTTGTGCATATACCAGGGTAACAAGGGAAAAGCAGTGAGGGCTGGTGTTGTTCCCACACTGATGCGACTGCTGACAGAAGCTGGCGGGGGAATGGTTGATGAAGCGTTGGCCATATTGGCAATATTGGCAAGCCATCCTGAAGGGAAGGCTGCCATTGGTGCTGCAGATGCAGTTCCAGTTTTGGTTAAGGTTATTGGGAATGGATCCCCAAGGAACAAAGAGAATGCAGCTGCCGTTTTAGTACACCTTTGTTCTGGAGATCAGCAATATCTAGCACATGCTCAAGATCTTGGGGTGATGGGTCCATTGATGGATCTGGCTCAAAATGGTACAGATAGAGGTAAAAGAAAGGCAGCACAATTGCTAGAGCGAATGAGCAGGTTCCTTGAGCAACAGCAGCAGGAAGTTCAAACACTGAGTGAACTTCAAGCTCCAAATCAGGATATACGACTTCCTTCTATTACTAACCTTGTTGATAGCTGA 1995 0.4446 MDEDKAAIMQTSIDLVNEIASISDYRSTVKKHYCNLARRLKLLTPLFEEIRDSRESFSKDTFKPLLSFKEALESARELLRFGSEGSKIYMALERDQIMNKYQEVTAQLEQALSGITYDNLDISDEVKEQVELVLAQFRRAKGKVDAPDVELYEDLLSLYDKSSDASTDPAVLRRLAEKLQLMGISDLTRESLALHEMVAASGGDPGASFEKMSMLLKKIKDYVQTENLVIDDNERGKSLSSTSSKQGASEKGHHVPVIPDDFRCPISLELMKDPVIVSTGQTYERTCIERWLEAGHGTCPKTQQTLTSTVLTPNYVLRSLIAQWCEANGIEPPKRPSTSRPSKSASACSPAERSMIENLLRKLTSGNADDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLFIPDSRTQEHAVTALLNLSICENNKGSIVSSGAVPGIVHVLRKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMRLLTEAGGGMVDEALAILAILASHPEGKAAIGAADAVPVLVKVIGNGSPRNKENAAAVLVHLCSGDQQYLAHAQDLGVMGPLMDLAQNGTDRGKRKAAQLLERMSRFLEQQQQEVQTLSELQAPNQDIRLPSITNLVDS 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0173 664 Gene3D - 5 117 IPR036537 GO:0007166
Sto12g0173 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Sto12g0173 664 CDD RING-Ubox_PUB 262 304 IPR045210 -
Sto12g0173 664 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Sto12g0173 664 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Sto12g0173 664 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Sto12g0173 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 437 479 IPR000225 GO:0005515
Sto12g0173 664 SMART arm_5 508 548 IPR000225 GO:0005515
Sto12g0173 664 SMART arm_5 591 631 IPR000225 GO:0005515
Sto12g0173 664 SMART arm_5 549 589 IPR000225 GO:0005515
Sto12g0173 664 SMART arm_5 467 507 IPR000225 GO:0005515
Sto12g0173 664 SMART arm_5 385 425 IPR000225 GO:0005515
Sto12g0173 664 SMART arm_5 426 466 IPR000225 GO:0005515
Sto12g0173 664 MobiDBLite consensus disorder prediction 335 350 - -
Sto12g0173 664 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 646 - -
Sto12g0173 664 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Sto12g0173 664 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Sto12g0173 664 MobiDBLite consensus disorder prediction 233 256 - -
Sto12g0173 664 Pfam Neurochondrin 520 643 IPR008709 -
Sto12g0173 664 SUPERFAMILY ARM repeat 354 639 IPR016024 -
Sto12g0173 664 Gene3D - 339 661 IPR011989 -
Sto12g0173 664 PANTHER U BOX DOMAIN-CONTAINING 7 646 - -
Sto12g0173 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 331 IPR013083 -
Sto12g0173 664 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Sto12g0173 664 Coils Coil 626 646 - -
Sto12g0173 664 MobiDBLite consensus disorder prediction 330 350 - -
Sto12g0173 664 SUPERFAMILY RING/U-box 249 334 - -
Sto12g0173 664 MobiDBLite consensus disorder prediction 234 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0173 Sto-Chr12 1038970 1043177 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0173 1 638 U-box Gene Family AT3G46510 72.188 0.0 939
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0173 - - pvy:116146246 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0173 12 1038970 1043177 Sto12g0173 12 1038970 1043177 ECH