Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0166 ATGGCAGACGCTGAGGATATTCAACCACTCGTCTGCGATAATGGGACAGGAATGGTTAAGGCTGGATTCGCTGGTGATGATGCTCCAAGGGCTGTCTTCCCTAGCATTGTTGGTCGTCCACGTCACACTGGTGTGATGGTTGGCATGGGCCAGAAAGATGCTTATGTTGGGGATGAAGCTCAGTCCAAGCGTGGTATCTTAACTCTGAAATATCCCATTGAGCATGGTATTGTCAGTAACTGGGATGACATGGAGAAGATTTGGCATCACACCTTCTACAACGAACTCCGTGTTGCCCCGGAGGAGCACCCAGTTTTACTCACTGAAGCACCTCTCAACCCAAAGGCTAACCGTGAGAAAATGACTCAAATTATGTTTGAGACCTTCAATACACCTGCTATGTATGTTGCCATCCAGGCTGTTCTATCCTTGTATGCCAGTGGCCGTACAACTGGTATTGTTCTGGACTCCGGAGATGGTGTCAGCCATACTGTTCCCATTTATGAGGGGTATGCCCTACCACATGCCATCCTCCGTCTTGACTTGGCAGGGCGTGACCTCACTGATGCCTTGATGAAAATCCTCACTGAGCGTGGTTATTCCTTCACTACCACAGCTGAGCGTGAAATTGTGAGGGACGTGAAGGAAAAACTGGCTTATATTGCCCTTGACTATGAACAGGAGCTTGAAACTGCCAAGACAAGCTCTGCTGTTGAGAAGAGCTATGAGTTGCCTGATGGACAGGTCATCACAATTGGCGCTGAGCGTTTCCGTTGTCCGGAAGTCCTGTTCCAACCATCCATGATCGGAATGGAAGCTGCAGGCATTCATGAAACCACTTACAATTCTATTATGAAGTGCGATGTTGATATCAGGAAGGACTTGTATGGAAACATTGTCCTTAGTGGTGGATCAACCATGTTCCCTGGTATTGCTGACAGAATGAGCAAGGAAATCACTGCTTTGGCCCCTAGCAGCATGAAGATCAAGGTGGTTGCTCCACCAGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCCATCTTGGCTTCTCTCAGCACTTTTCAACAGATGTGGATTGCAAAGGCAGAGTACGATGCTATGGCAGAATGTGCTGAAACGGTGCACGTAGCTCTCGGCAAATCGGTGGACAAAGCTGTCAATTTGCTTCGATGGACTTTCAACCACTTTAGGAACTCACAAATTTGCATACTTCATGTTTATCAACCTTCCTCCGTGATCCCCACTCTTTTAGGAAAATTGCCAGCAAGCCAAGCAAATCCCGAAGTTGTGTCTGCTTTTAGAAGAGAGGAAAGAGAACTTACGACGAAGCTTTTGGAAAATTACTTGAGCATTTGCCGTGCAGCTAAGGTTAAGGCAACAAGCGTCATAACTGAAGCTGACCAAGTTCCAAAAGGGATTGTTGATTTAATTACCAGGCATGGTATTAGGAAGATTGTTATAGGATCAGTACCAGAAAATTGCATGAAGGTGAAAAGGAATTCCAGAAAAGCAAATTATGCTGCCAAGAATGCTCCCCCATTCTGTGAAATATGGTTTATCCACAAAGGTAGACACATATGGACAAGAGAAGCTTCTGAGAGTCCTTGTTCTTTCTCTTCACATCCCCAACTCCAACCTGAGATTGCAGCCTCAGAAAGCTTGAGAACTAGATCATTTCAATACGGTAAGAAAGAATTGTTCCAATCAGAGTGTCTTCAATCAAATTCTGAAAGAACTGTAATCTGTACTGGAACTAGTAGTTGGTCTCGGGGTGAAATCCTTGAAACAGATGCAACTTCTTCATCCAAATCAACCGGTTGTACCAGTCATTGTTCTCCCCAAAATTCTGCTAGGGAGTATTTAGAGACTTATTTGGACATTGAGGAGGAAAGAGTTTGTAGTCAACTTACGGAAGCTAAGATAGAAGTTGAGGCTGCAACAGATGAGGCTTTTGCAGAGCTATTAAAGTGCAAAAGGTTGGAAGCAGAAGCCATGGAGGCTATAAAGAAGGTAAGCATAATTAACCTATTGGGTGTTCATCATCCTGGGCTTTTGTTAGCAAAGAAGCTCAATATGCTAGAATTAGCATATGCATCTGAAGTAAAGCTAAGAAAGGAGGCAGAGAATGCGCTGAATGCCACAGTACAGGAGCAACAAAAGCTCTTGGATGAGAGTGAAGAAATTGCTTGTGTGCTACAGAGGACCATGAGAAATATTGCCCTTTTGGACAATCGTGCACAGGAAGCAAACCGTAGGCAAGATGAAGCTGCAGATGAGCTTTTATTAATTCAAGCCTCCATCTCAACCCTGTGGCATGAAAAACAGCAAATCAGACGACAAAAAATGGAAGCCCTCCGCTGGTTGGAGCGGTGGAAAAATCGTGGACAAGTTGGAGGTGCACCCTGCCATGGGGTCATTGGGTTTGCTGAGGAATTACCAGAGTTAGCAGAATTTTCCTTGTCAGATCTTCAAAATGCTACATGCAATTTTTCTGAGAGCTTCAAGATTGGGCAGGGAGGATATGGTTGTATTTATAAGGGGGAAATGTTGGGGAGAACTGTTGCTATAAGGAAGCTCCATCCACATAACATGCAAGGACCAGCTGAGTTTCATCAAGAGGTTCAAGTTCTCGGTTGTCTACAACACCCTCATCTGTTGACCTTGCTGGGGGTTTGCCTTGAAGCCTGGTCACTTGTATATGAATACTTGCCTAATGGGAGTCTTCAAGACCATCTATTCCGGAAAAACAACACTAACCCTATAACATGGAATAGCCGAGCACGTATGATTGCTGAAATCGCAAGTGCTCTTTGCTTCTTACACACTTCCAAACCTAAAACTATTGTCCATGGTGATCTGAAGCCTGAAACCATACTCCTTGATTCTGCACTTAGTTGCAAGATATGTGAATTTGGGTTCAGCAGACTTTTAACACAGGAGTCACTCCATCGTCCTAGTTTCAGCTTCAGCACCAAACCAAAGGGTGCCTTAACATATACAGATCCGGAGTACCAGAGAACTGGAATACTAACGCCCAAATCTGATATTTACTCCTTTGGACTCGTCATATTGCAACTCCTCACTGGTAGGACTCTTCCAGTTGGGTTAGCAGGTGAAGTACGCAAGGCAGTTTCTTGTGGAAGATTGTCTTCCATAATGGATTCTTCAGCTGGAGAATGGCCTCCTGCCGTGGCAACACGATTAGTTGAACTGGGACTGCAATGCTGTCAGCTAAATGGTAGAGACAGACCAGATCTCACACCTGCTTTGGTTAGAGAATTGGAGCAATTGCATGTTTCTGTAGATCGACCTGTGCCATCTTTTTTCTTGTGCCCCATCCTTCAGGAAATCATGCTTGATCCTCAGGTTGCAGCTGACGGATTCACTTATGAAGGAGAAGCAATACGGGAATGGTTAGAAAGTGGGCATGAAACTTCACctatgactaatttaaaaatgaGTCACCTGCATCTTACTCCCAATCACGCAGTTCGTCTTGCGATCCAAGACTGGCTCTGCAAATCCTGA 3528 0.4476 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDAMAECAETVHVALGKSVDKAVNLLRWTFNHFRNSQICILHVYQPSSVIPTLLGKLPASQANPEVVSAFRREERELTTKLLENYLSICRAAKVKATSVITEADQVPKGIVDLITRHGIRKIVIGSVPENCMKVKRNSRKANYAAKNAPPFCEIWFIHKGRHIWTREASESPCSFSSHPQLQPEIAASESLRTRSFQYGKKELFQSECLQSNSERTVICTGTSSWSRGEILETDATSSSKSTGCTSHCSPQNSAREYLETYLDIEEERVCSQLTEAKIEVEAATDEAFAELLKCKRLEAEAMEAIKKVSIINLLGVHHPGLLLAKKLNMLELAYASEVKLRKEAENALNATVQEQQKLLDESEEIACVLQRTMRNIALLDNRAQEANRRQDEAADELLLIQASISTLWHEKQQIRRQKMEALRWLERWKNRGQVGGAPCHGVIGFAEELPELAEFSLSDLQNATCNFSESFKIGQGGYGCIYKGEMLGRTVAIRKLHPHNMQGPAEFHQEVQVLGCLQHPHLLTLLGVCLEAWSLVYEYLPNGSLQDHLFRKNNTNPITWNSRARMIAEIASALCFLHTSKPKTIVHGDLKPETILLDSALSCKICEFGFSRLLTQESLHRPSFSFSTKPKGALTYTDPEYQRTGILTPKSDIYSFGLVILQLLTGRTLPVGLAGEVRKAVSCGRLSSIMDSSAGEWPPAVATRLVELGLQCCQLNGRDRPDLTPALVRELEQLHVSVDRPVPSFFLCPILQEIMLDPQVAADGFTYEGEAIREWLESGHETSPMTNLKMSHLHLTPNHAVRLAIQDWLCKS 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0166 1175 SUPERFAMILY Actin-like ATPase domain 149 366 IPR043129 -
Sto12g0166 1175 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Sto12g0166 1175 Gene3D HUPs 373 506 IPR014729 -
Sto12g0166 1175 Pfam U-box domain 1105 1174 IPR003613 GO:0004842|GO:0016567
Sto12g0166 1175 Gene3D - 10 366 - -
Sto12g0166 1175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1104 1175 IPR013083 -
Sto12g0166 1175 PRINTS Actin signature 28 37 IPR004000 -
Sto12g0166 1175 PRINTS Actin signature 51 62 IPR004000 -
Sto12g0166 1175 PRINTS Actin signature 63 85 IPR004000 -
Sto12g0166 1175 PRINTS Actin signature 117 130 IPR004000 -
Sto12g0166 1175 PRINTS Actin signature 142 161 IPR004000 -
Sto12g0166 1175 PRINTS Actin signature 238 254 IPR004000 -
Sto12g0166 1175 Gene3D Actin; Chain A, domain 4 182 273 - -
Sto12g0166 1175 ProSiteProfiles U-box domain profile. 1104 1175 IPR003613 GO:0004842|GO:0016567
Sto12g0166 1175 PANTHER OS02G0152300 PROTEIN 361 1174 - -
Sto12g0166 1175 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Sto12g0166 1175 Coils Coil 704 724 - -
Sto12g0166 1175 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Sto12g0166 1175 PANTHER OS10G0100500 PROTEIN 361 1174 - -
Sto12g0166 1175 SUPERFAMILY Protein kinase-like (PK-like) 814 1097 IPR011009 -
Sto12g0166 1175 Pfam Actin 5 367 IPR004000 -
Sto12g0166 1175 SMART Ubox_2 1108 1171 IPR003613 GO:0004842|GO:0016567
Sto12g0166 1175 CDD STK_N 373 523 - -
Sto12g0166 1175 SUPERFAMILY RING/U-box 1102 1174 - -
Sto12g0166 1175 Pfam Protein tyrosine and serine/threonine kinase 835 1087 IPR001245 GO:0004672|GO:0006468
Sto12g0166 1175 ProSiteProfiles Protein kinase domain profile. 830 1101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto12g0166 1175 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Sto12g0166 1175 Gene3D Phosphorylase Kinase; domain 1 807 902 - -
Sto12g0166 1175 ProSitePatterns Protein kinases ATP-binding region signature. 836 858 IPR017441 GO:0005524
Sto12g0166 1175 Coils Coil 732 759 - -
Sto12g0166 1175 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 386 491 - -
Sto12g0166 1175 CDD RING-Ubox_WDSUB1_like 1109 1150 - -
Sto12g0166 1175 Gene3D Transferase(Phosphotransferase) domain 1 903 1103 - -
Sto12g0166 1175 Gene3D - 140 340 - -
Sto12g0166 1175 SMART actin_3 7 376 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0166 Sto-Chr12 1000463 1009040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0166 1 365 Cytoskeleton Gene Families AT3G12110 97.260 0.0 748
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Sto12g0166 Actin 1.1e-138 CL0108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0166 - - gmx:100788846 1201.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g1160 7 9674911 9679396 Sto12g0166 12 1000463 1009040 CCT
Sto12g0166 12 1000463 1009040 Sto12g0166 12 1000463 1009040 ECH
Sto12g0166 12 1000463 1009040 Sto7g1160 7 9674911 9679396 ECH