Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0153 CTGCTGTGCATTGCCTCTCTGATTTGGTTGGTTGAAGGTAGAATCCCAGGGGTTTACACTGGGGGTTCTTGGCAATCTGCTCATGCCACTTTCTACGGAGGATCCGATGCTTCCGGCACTATGGGTGGAGCTTGTGGGTATGGAAACTTGTACAGCCAAGGTTATGGAGTGAACACAGCTGCATTGAGCACAGCACTATTCAACAATGGACTCAGCTGCGGTGCGTGCTTCGAGATCAAGTGCGCTAACGACAGACAGTGGTGTCACTCCGGCAGCCCTTCCATCTTCATCACCGCCACTAACTTCTGCCCACCCAACTACGCTCTCCCTAACGACAATGGCGGCTGGTGCAACCCTCCCCGCCCTCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACCGCGCCGGCATCGTCCCCGTCGCCTACCGCCGGGTGCCCTGTAGGAAGCGGGGAGGGATGAGGTTTACCATCAATGGCTTCAAGTACTTCAACTTGGTGCTCGTCAGCAACGTCGCGGGTGCAGGGGATTTAGTGAGGGCCTACATCAAGGGCTCCAGGACTGGGTGGATGCCTATGAGCAGAAACTGGGGACAGAATTGGCAGTCTTGGCAATTCGCTCAAACTTTCACTGGCAAGAATTTTCGAGTTTGA 663 0.552 LLCIASLIWLVEGRIPGVYTGGSWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCRKRGGMRFTINGFKYFNLVLVSNVAGAGDLVRAYIKGSRTGWMPMSRNWGQNWQSWQFAQTFTGKNFRV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0153 220 Pfam Lytic transglycolase 59 146 IPR009009 -
Sto12g0153 220 SUPERFAMILY Barwin-like endoglucanases 4 174 IPR036908 -
Sto12g0153 220 PRINTS Expansin/Lol pI family signature 139 155 IPR007118 GO:0005576
Sto12g0153 220 PRINTS Expansin/Lol pI family signature 193 207 IPR007118 GO:0005576
Sto12g0153 220 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Sto12g0153 220 PRINTS Expansin/Lol pI family signature 23 38 IPR007118 GO:0005576
Sto12g0153 220 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576
Sto12g0153 220 Gene3D - 13 152 IPR036908 -
Sto12g0153 220 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 166 220 IPR007117 -
Sto12g0153 220 SMART dpbb_1 59 146 IPR007112 -
Sto12g0153 220 PANTHER EXPANSIN 4 206 - -
Sto12g0153 220 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Sto12g0153 220 PRINTS Expansin signature 155 167 IPR002963 GO:0009664
Sto12g0153 220 PRINTS Expansin signature 114 131 IPR002963 GO:0009664
Sto12g0153 220 PRINTS Expansin signature 131 144 IPR002963 GO:0009664
Sto12g0153 220 PRINTS Expansin signature 54 68 IPR002963 GO:0009664
Sto12g0153 220 PRINTS Expansin signature 81 92 IPR002963 GO:0009664
Sto12g0153 220 PRINTS Expansin signature 167 188 IPR002963 GO:0009664
Sto12g0153 220 Pfam Expansin C-terminal domain 157 208 IPR007117 -
Sto12g0153 220 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 156 IPR007112 -
Sto12g0153 220 Gene3D - 157 219 IPR036749 -
Sto12g0153 220 PANTHER EXPANSIN-A15 4 206 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0153 Sto-Chr12 945727 946638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0153 1 220 Expansin Gene Family AT2G39700 72.800 8.86e-135 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0153 - - gmx:100791522 434.106