Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0147 ATGGATCCAAACTTCATGAACGGCAATACAATATATGACGAAACCGTCTTCTCCGATCCTAGCAATTTCCCAAATCTAGCGAACGATTGGGAACTCGATCAATACTATGGAAACCTTTATTTCTCAGCCAATCCTTTCTATCAACCTTATGCAGACCCATTTAGTTTTGGTCCTTCTACGAGCCTTAACTCCGAAGCAGAGCAAGTAGTTTCATCCTGGACTATGGACCCTGTAGGAGGGGGGTCAGGTCTAGAAGCTGCAGCTATAACTTCGCTGGCGGATCCTTTGCTGGAAGACGCTGACTTTTCAGAAACCGCCAAGTACATAAGTCAAATTCTTATGGAAGAGAACTTTGAACAGAAACCAAGTATGTTCTATGATCCATTGAGTCTGCAAGTCACGGAAAAATCATTTTATGATGCTCTCAAAGAGAATCATTCTCTTTCCCCTAATCAACATccactcgatattcatcagaaTCTTGATAGCCCAGATGGTAATTGTTCTGCTGCTGCTGGCAGTAGTAGTAGTATTGATTCTGCCAGTAACAGCAGTAGCACCAATAATTCTCACGAGGCCAAGCCTTCTTCCCCGGATGCCCCAATGTCTGGTGATTATGTTTTCCCTTTGAATTCGAATCCCATCTCTGAGAAGCCCTTTCAACTTCCAACTGCTTCTACTAATATTGCGGATGGACTGTTAGATTGGGATTCCTCATTTACTAAGCTCTTGGCTCAAAATATCTTCACTGATGCAGAATCTGTCTCACAGTTTAAGAGGGGTTTAGAGGAAGCTAGCAAGTTTCTTCCTAGAAGGCCTCAACTTGTCACCGGTCTGGAGAACGACAAGGAGTCTCCAGAGTCCAAGAGAGAGGCAAAAAAGGCAGTAGTCAACATTGGGGAGCATTTGAATGGGTTAAAGAGTAGGAAGAATCATGAGCGTGAAGGTAATGAtacagaagaagaaagaagcaaCAAGCAGTCAGCAGTATATGTGGACGAGAGTGATATATCAGAAATGTTTGATAGGGTGTTGCTTAGTGTTGAGAATGTTCCAATATGTGATGAACACAAAGGGTTGCAGAACGGAACACTTAAAGCCAAGGAGCCAAGTGAAGAGCCACATTCATCTGATGGGAGGAAGTCTCGCTCTAGAAGACAAGGCAGGAAGAAGGAAACCGTGGATTTGAGGACCCTCCTGGTTCTATGTGCACAAGCTGTGACTGCAAATGACAGCAGAACTGCTAATGAATTACTGAAGCAGATTAGGCAGCATGCTTCCCCACTTGGTGACGCATCACAGAGGTTGGCTCATTACTTTGCCAATGGCCTTGAGGCACGCTTGGTTGGTACTGGTACTGGAACCCAAATATTTTATACCTCTCTGAGCTCCAAAAGGATCTCTGCTGCTGATATCTTGAAAGCTTACTCAGCTCTAATATCTATCTGCCCTTTCAAGAAGTTTGCATATTTTTTTGCAAACAAGACGATTATGGATGCAGCTGAAAAGGCAGAATCCCTACATATTATCGATTTTGGCATTCAGTATGGTTTCCAGTGGCCCATACTCATTAAGTTTCTTTCTAAAAGACCTGGGGGGCCTCCGAAGCTACGTATCACAGGGATAGAAATTCCCCAAGCAGGCTTTCGTCCAGCAGAAAGAATTGAGGAGACTGGTCGACGTCTAGCTAATTATTGCACACGCTTTGACGTTCCATTTAAATACAATGCCATACCATCAAAAAACTGGGAAACCATCCCACTGGAGAAGTTTAAGATTAAGAAGAATGAGATGCTTGCTGTGAACTGTTTGATGAAATTTAAGAATTTACTGGACGAGACCATTGAAGTAAACAGTCCTAGAAATGCAGTTCTGGATTTGATCAGGAAGATGAATCCAGATATTTTTGTCCAATCCGTTGTTAATGGATCCTATAATGCCCCTTTCTTTGCCACACGGTTCAAAGAGGCGCTGTTCCATTTTTCTGCATTGTATGATATGTTTGACACTCTGATGCCCCGTGAAAATGAATGGAGGTCGATGTTTGAGAAGGAGTTTTTGGGTCGGGAGTCAATGAATGTGATAGCATGTGAAGGGATGGAGAGGGTTGAGAGGCCTGAGACATACAAGCAATGGCAGGTTAGGAATACAAGGGCTGGTTTCAGGCAGAGCCCATTGAATGAGGAGTTAATGGCCAAACTTAGGGAAAAGTTGAAGGCATGGTATCACAGAGATTTTGTATTTGATGAAGACAACAACTGGATGCTTCAGGGCTGGAAGGGTCGCATTTTGTATGCTTCTACGTGTTGGGTGCCAGCATAA 2322 0.4276 MDPNFMNGNTIYDETVFSDPSNFPNLANDWELDQYYGNLYFSANPFYQPYADPFSFGPSTSLNSEAEQVVSSWTMDPVGGGSGLEAAAITSLADPLLEDADFSETAKYISQILMEENFEQKPSMFYDPLSLQVTEKSFYDALKENHSLSPNQHPLDIHQNLDSPDGNCSAAAGSSSSIDSASNSSSTNNSHEAKPSSPDAPMSGDYVFPLNSNPISEKPFQLPTASTNIADGLLDWDSSFTKLLAQNIFTDAESVSQFKRGLEEASKFLPRRPQLVTGLENDKESPESKREAKKAVVNIGEHLNGLKSRKNHEREGNDTEEERSNKQSAVYVDESDISEMFDRVLLSVENVPICDEHKGLQNGTLKAKEPSEEPHSSDGRKSRSRRQGRKKETVDLRTLLVLCAQAVTANDSRTANELLKQIRQHASPLGDASQRLAHYFANGLEARLVGTGTGTQIFYTSLSSKRISAADILKAYSALISICPFKKFAYFFANKTIMDAAEKAESLHIIDFGIQYGFQWPILIKFLSKRPGGPPKLRITGIEIPQAGFRPAERIEETGRRLANYCTRFDVPFKYNAIPSKNWETIPLEKFKIKKNEMLAVNCLMKFKNLLDETIEVNSPRNAVLDLIRKMNPDIFVQSVVNGSYNAPFFATRFKEALFHFSALYDMFDTLMPRENEWRSMFEKEFLGRESMNVIACEGMERVERPETYKQWQVRNTRAGFRQSPLNEELMAKLREKLKAWYHRDFVFDEDNNWMLQGWKGRILYASTCWVPA 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0147 773 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 80 772 IPR005202 -
Sto12g0147 773 ProSiteProfiles GRAS family profile. 387 771 IPR005202 -
Sto12g0147 773 MobiDBLite consensus disorder prediction 149 210 - -
Sto12g0147 773 MobiDBLite consensus disorder prediction 359 391 - -
Sto12g0147 773 PANTHER SCARECROW-LIKE PROTEIN 34 80 772 - -
Sto12g0147 773 Pfam GRAS domain family 396 770 IPR005202 -
Sto12g0147 773 MobiDBLite consensus disorder prediction 298 331 - -
Sto12g0147 773 MobiDBLite consensus disorder prediction 149 196 - -
Sto12g0147 773 MobiDBLite consensus disorder prediction 305 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0147 Sto-Chr12 918194 920515 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0147 107 773 GRAS Transcription Factor Family AT1G07530 51.659 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Sto12g0147 GRAS 1.7e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0147 - - adu:107461599 918.302
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto7g1206 7 10229668 10233602 Sto12g0147 12 918194 920515 CCT
Sto12g0147 12 918194 920515 Sto7g1202 7 10196904 10199141 CCT
Sto12g0147 12 918194 920515 Sto12g0147 12 918194 920515 ECH
Sto12g0147 12 918194 920515 Sto7g1206 7 10229668 10233602 ECH