Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0142 ATGAGTTTCGTTTTCCGAGGGAGTAGAGGAGATATTGAAAGTGGATTTCCAGAATATGTTCCCGAAAGAGCCGCAATGCGTCTTCATCCAACTCGGCCAGTAAATAGCAATTCTCTGGCTTTTCTCATCACAGTTATCTTGCTATTCATGATACTGAACTCTCCCCAGATGTCACATTATTTTTTGATGTGGCTTGTGCTGGCTGTGTTTGTGATGGCTACAAGCCTGAGGATGTATGCAACTTGTCAACAACTTCAAGCTCAAGCAAGGGCTCATGCTGCAGCAGCCACTGGGATGCTTGGCCATACTGAATTACGACTTCACATGCCACCATCAATAGCAATTGCAACTAGAGGTCGCTTGCAAGGACTAAGACTTCAGCTTGCACTCCTTGACCGCGAATTTGATGAGCTTGATTATGACACTTTGAGGGCTCTAGACTCAGACACTGCTTCTAGTACTACATCAATGACTGAGGAAGAGATAAATGCTTTGCCTGTCCACACATATAAAGTTGCAGGCCCGCCCAAGGATGGCTCAGGTGGATTGGCATCCTCTTCACGTTCAAAGGCACAGATTAAACAAGAGAATGGAGGAACAGAGGGAAATATAAAGGGTACAGAAGATGAGCTAACCTGTACCATATGCTTGGAGCAAGTTAACAGGGGGGAGCTGGTTCGTAGCTTGCCATGTTTGCATCAGTTTCATACCAACTGCATCGATCCATGGCTGCGGCAACAAGGAACATGCCCAGTGTGTAAATTAAGGATCGGGTCGGGATGGCGGCCAAACAGAGCGGGGAGCGAGTCTGAAGGTTCAGATATTGTGTAG 831 0.4669 MSFVFRGSRGDIESGFPEYVPERAAMRLHPTRPVNSNSLAFLITVILLFMILNSPQMSHYFLMWLVLAVFVMATSLRMYATCQQLQAQARAHAAAATGMLGHTELRLHMPPSIAIATRGRLQGLRLQLALLDREFDELDYDTLRALDSDTASSTTSMTEEEINALPVHTYKVAGPPKDGSGGLASSSRSKAQIKQENGGTEGNIKGTEDELTCTICLEQVNRGELVRSLPCLHQFHTNCIDPWLRQQGTCPVCKLRIGSGWRPNRAGSESEGSDIV 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0142 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 259 IPR013083 -
Sto12g0142 276 CDD RING-H2_PA-TM-RING 212 254 - -
Sto12g0142 276 Pfam Ring finger domain 212 254 IPR001841 -
Sto12g0142 276 MobiDBLite consensus disorder prediction 182 202 - -
Sto12g0142 276 SUPERFAMILY RING/U-box 208 259 - -
Sto12g0142 276 PANTHER TARGET OF ERK KINASE MPK-1 1 276 - -
Sto12g0142 276 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Sto12g0142 276 SMART ring_2 213 253 IPR001841 -
Sto12g0142 276 MobiDBLite consensus disorder prediction 170 204 - -
Sto12g0142 276 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 276 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0142 Sto-Chr12 890343 891943 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0142 1 276 C3H Transcription Factor Family AT3G55530 69.675 1.16e-127 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0142 K16283 - gmx:100805406 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0142 12 890343 891943 Sto12g0142 12 890343 891943 ECH