Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0140 ATGAACTCCGTTATGTCGTCTCCTCCTCCCTCCTATTGGTGCTACAGTTGTACCCGCTTTGTTCGCCTCTTGCCTCACGACGACATCGCTTGTCCTCACTGCCAAACCGGCTTCGTTGAAGAGATCCACAACAACCATCATCACCACACCCCCTTTTCTCCTTCTATCTTCCCCGACGCTCCTCCCGCTTCCTACCATTTCACCAGACAAGCCTTCCGCCGAAGACGCCGCAACCCATCTCCCTTTAATCCCGTTATTGTTCTCCGTGGACCCGCCGACAACGCTGCCGATCAGGACGAAACCAGCTTTGAACTCTACTATGACGATGGAGATGGGTATGGTCTCCGACCCCTGCCTCCGGCTATGTCCGAGTTCTTGTTGGGCTCAGGATTTGAACGCCTTCTGGAACAGTTTGCCCAGATCGAGATGAACGGGTTCGGGCGACCCGAGAACCCGCCGGCTTCTAAAGCGTCTGTGGAATCGATGCCCACGATTCAGATTGGGGAGGACCACGTGGGTTCCGAAGCACACTGTGCCGTGTGCAAAGAAGCTTTCGAGCTCGGAACTGAGGCGCGTGAAATGCCGTGCAAACACATTTACCATTCAGACTGCATCCTCCCATGGCTTTCAATGCGCAATTCCTGTCCCGTGTGCCGCTACGAGTTGCCTTCGGATGGAAACCCATTGGAGAGCAGAATTTCAGGACAAATCGATGAAGAGACGGTGGGATTAACAATATGGAGGCTACCCGGTGGGGGTTTTGCTGTTGGAAGGTTTTCGGGCGGTCGCAGAGCCGGTGAGAGTCATTTTCCTGTTGTGTACACAGAAATGGACGGTGAACTGAACACAAATGGGGTTCCGAGAACAATTTCCCGGGCATCAAGGAGCACAAGAGTTAGAGAAAGTCGTGGATTGGGCAGAATTTTTCGCAATGTCTTGTCCTTCTTCGGGAGGCGTCGGTCGAGGACAAGTTCGTCTGAAGACGAGTCCTTGAGTATAAGCCGAAGCCATTCGAGTTCGGTGTTCAGTAGGAACTCCAGGAGGCGCAGCCGAAGTTGGGTTATGGAAGATTGA 1074 0.5335 MNSVMSSPPPSYWCYSCTRFVRLLPHDDIACPHCQTGFVEEIHNNHHHHTPFSPSIFPDAPPASYHFTRQAFRRRRRNPSPFNPVIVLRGPADNAADQDETSFELYYDDGDGYGLRPLPPAMSEFLLGSGFERLLEQFAQIEMNGFGRPENPPASKASVESMPTIQIGEDHVGSEAHCAVCKEAFELGTEAREMPCKHIYHSDCILPWLSMRNSCPVCRYELPSDGNPLESRISGQIDEETVGLTIWRLPGGGFAVGRFSGGRRAGESHFPVVYTEMDGELNTNGVPRTISRASRSTRVRESRGLGRIFRNVLSFFGRRRSRTSSSEDESLSISRSHSSSVFSRNSRRRSRSWVMED 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0140 357 Pfam Protein of unknown function (DUF1117) 242 347 IPR010543 -
Sto12g0140 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 225 IPR013083 -
Sto12g0140 357 MobiDBLite consensus disorder prediction 327 348 - -
Sto12g0140 357 PANTHER OS05G0110000 PROTEIN 7 304 - -
Sto12g0140 357 SMART ring_2 178 218 IPR001841 -
Sto12g0140 357 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Sto12g0140 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 304 - -
Sto12g0140 357 CDD RING-H2_RNF126_like 178 219 - -
Sto12g0140 357 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Sto12g0140 357 SUPERFAMILY RING/U-box 159 225 - -
Sto12g0140 357 MobiDBLite consensus disorder prediction 326 357 - -
Sto12g0140 357 Pfam Ring finger domain 177 219 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0140 Sto-Chr12 881806 882879 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0140 117 230 C3H Transcription Factor Family AT5G01980 45.614 2.79e-28 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0140 - - gmx:100792874 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0140 12 881806 882879 Sto12g0140 12 881806 882879 ECH
Sto12g0140 12 881806 882879 Sto7g1269 7 10943041 10944506 ECH
Sto6g0618 6 6542306 6545320 Sto12g0140 12 881806 882879 ECH