Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0139 ATGGATAGACCAATGAAGGCAGCGAAGAGAAGAGCTTGGATTACAGTGGAGACGCCTTCatcggtggtggtggtggagacAATATCCTGGACAGTCTCAACGGCGGTGGATTCCAAGGCTGAAAGGTTGCAAGTTGCCCTGATCATGGGGCTTAAGGTTGAAGACTCAATCTTCAACATCTACTCTTCAATTACTCTGAATCTGCCCTTGTTATCAATGGGGGAGGAGGTGAAGATGACCGACTACGACGGCGCTGCTGCCGACGAAGACGAACGCGTTCTCGAATGGGAGTTAGGTCTGCCTACTGCCGATGACCTCACTCCTCTCTCTCTGCCCTTGATCCCACCGGAGCTCGCTTCCGCCTTTAGCATATCGCCGGAGCCCTGCCGGACACTCCTCGACGTCAATCGTGCCTCGCAGAATACTCTATCGAGTCTCCGCGGCGGAAGCGGTCAGGCCTTCTCATCCAATAATTTCAAGTCTTTCAACGATGATCGGAGTCGGGACCCCATCGTGGTGGAAGGCGATGAAGAGGGTGATCGAGATGGGTCAGGATCCGAATCCAGGAAATTGAGGAAAATTGATTGCACAGAAGAAGCTGATTCGGCTTTGCGAACTGAGAATTCGACGGATGATCCGTCTGCTCGGACCTTGAAGCGGCCTCGCCTCGTATGGACTCCGCAGTTACACAAGCGGTTTGTGGATGTGGTGGCTCATCTGGGGATCAAGAACGCCGTGCCCAAGACGATTATGCAATTAATGAATGTGGAGGGGTTGACCCGAGAGAATGTCGCAAGTCATCTTCAGAAGTATCGGCTTTACTTGAAGAGAATGCAGGGTCTGTCCAATGAAGGTCCTTCTTCCTCTGACCAGCTCTTTGCTTCCACACCTGTGCCCCAGAGCTTACACGAGTCTGGTGGAAGTGGCCATTCTCATGGAAATGGCCATCTCCCCGTGCCGATTCCCATGCACTATCCCACGCCCATGATGCCCATGCCCGTTCTTGGCATGCCTCATGGTCACGCTCATCCACCACATGCTCACATGGGAATGCCAGTGCCAAACCATGGCTTCGAGTCTCACCCTTATAACATGTTGCAGCAAAGGGATTGGTCTGGTTCTGGAAATAAATATGCTCCGGTTGTATCATACCCTCACGTTACTACTAATGATAAATGA 1179 0.5106 MDRPMKAAKRRAWITVETPSSVVVVETISWTVSTAVDSKAERLQVALIMGLKVEDSIFNIYSSITLNLPLLSMGEEVKMTDYDGAAADEDERVLEWELGLPTADDLTPLSLPLIPPELASAFSISPEPCRTLLDVNRASQNTLSSLRGGSGQAFSSNNFKSFNDDRSRDPIVVEGDEEGDRDGSGSESRKLRKIDCTEEADSALRTENSTDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHESGGSGHSHGNGHLPVPIPMHYPTPMMPMPVLGMPHGHAHPPHAHMGMPVPNHGFESHPYNMLQQRDWSGSGNKYAPVVSYPHVTTNDK 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0139 392 MobiDBLite consensus disorder prediction 281 308 - -
Sto12g0139 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 225 276 IPR017930 -
Sto12g0139 392 Pfam Myb-like DNA-binding domain 224 272 IPR001005 -
Sto12g0139 392 MobiDBLite consensus disorder prediction 162 193 - -
Sto12g0139 392 MobiDBLite consensus disorder prediction 281 316 - -
Sto12g0139 392 Gene3D - 217 279 - -
Sto12g0139 392 SUPERFAMILY Homeodomain-like 217 277 IPR009057 -
Sto12g0139 392 MobiDBLite consensus disorder prediction 155 193 - -
Sto12g0139 392 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 221 273 IPR006447 GO:0003677
Sto12g0139 392 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 73 390 - -
Sto12g0139 392 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 73 390 IPR044841 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0139 Sto-Chr12 872382 875183 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0139 73 376 G2-like Transcription Factor Family AT3G46640 54.859 4.63e-91 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sto12g0139 Myb_DNA-binding 1.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0139 - - zju:107411020 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0139 12 872382 875183 Sto12g0139 12 872382 875183 ECH