LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto12g0105	ATGGACAAACAAGAAGACATCTTCAAGGCTCTCATGCAAGATTTAGGAAAACATCATCTCGAGTCTTTCAGAGACGAGGTAGGAACGCTGATAAAGTCCTTAAATTTCGCATTGAAGAATTTGAAACAGTGGATGTCTGCTAAAAAGGCTAAATTGCCACAAATTGCACTACTTACAAGTGCAGAAATTGTTCCGGAGCCTTTGGGTCTGGTCCTCATAATCTCATCTTGGAATTTCCCCATTGGACTGTCCTTGGAGCCTCTAATAGGAGCAGTAGCTGCTGGAAACACAGTAGTACTAAAGCCTTCAGAGATATCTAGTGCAAGTGCTTGTCTACTAGCCTCTACTCTCTGTAATTACTTAGACAACAAAGCCATCAAGGTTATCCAAGGGGATCCAGAAGTTGCTCAGCAACTACTCCTCCAAAGATGGGACAAAATCTTCTTTACAGGAAGTGCACGTGTGGCACGAATTGTGATGTCTGAAGCTGCAAAACATCTGACGCCTGTGACTTTAGAGTTAGGGGGAAAATCCCCTGCAGTAGTTGATTCCCTTTCCTCTTCCTGGGACATACAGGTGGCTGTAAAAAGAATTATTGTGGGAAAATTCGGGACGTGTGCTGGTCAAGCATGCATAGCAATCGATTATGTCCTTGCAGAAAAGGAATTTACTTCCACATTGGTGGAATTGATGAAGGTGTGGATCACGAAAATGTTTGGAGAAAATCCAAAAGAATCCCACACTATTGCCAGGATTGTAAATAAACATCACTTCTTTAGACTCAAGAATCTTCTTTCCGATCCAAGGGTGAAACAGTCTGTAATTTATGGAGGCTCAATGGACGAAGAAAACTTATTCATTGAACCAACAATCTTGATGAATCCGCCAGTAGAGTCAGCAATCATGGCAGAAGAAATCTTTGGCCCACTGCTTCCAATAATTACTGTGGAGAAGATAGAGGATAGTATCAAATTCATAAACTCAAGGCCTAAGCCGCTAGCACTCTATGTGTTCACCAAAAACCCAACACTTGAGAGAAGAATAATGTTGGAAACATCGTCTGGAAGTGTGACATTCAACGATGCAATTCTACAGCGTGCCGTTTGGAGGAGTTGGAGAAAGTGGGTTTGgtatCCTCCATGGACTTTTAAGAAGTTTCAAGAACTTGAACAGGCTTACAACTATGACATTCTCGGATTACTCCTTGTCTTGTTGGGCTTAAAGAAATCATCAACACGTGTTTGA	1245	0.4177	MDKQEDIFKALMQDLGKHHLESFRDEVGTLIKSLNFALKNLKQWMSAKKAKLPQIALLTSAEIVPEPLGLVLIISSWNFPIGLSLEPLIGAVAAGNTVVLKPSEISSASACLLASTLCNYLDNKAIKVIQGDPEVAQQLLLQRWDKIFFTGSARVARIVMSEAAKHLTPVTLELGGKSPAVVDSLSSSWDIQVAVKRIIVGKFGTCAGQACIAIDYVLAEKEFTSTLVELMKVWITKMFGENPKESHTIARIVNKHHFFRLKNLLSDPRVKQSVIYGGSMDEENLFIEPTILMNPPVESAIMAEEIFGPLLPIITVEKIEDSIKFINSRPKPLALYVFTKNPTLERRIMLETSSGSVTFNDAILQRAVWRSWRKWVWYPPWTFKKFQELEQAYNYDILGLLLVLLGLKKSSTRV	414

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Sto12g0105	414	PANTHER	ALDEHYDE DEHYDROGENASE	375	411	IPR012394	GO:0006081
Sto12g0105	414	PANTHER	ALDEHYDE DEHYDROGENASE	2	366	IPR012394	GO:0006081
Sto12g0105	414	PANTHER	ALDEHYDE DEHYDROGENASE	375	411	-	-
Sto12g0105	414	PANTHER	ALDEHYDE DEHYDROGENASE	2	366	-	-
Sto12g0105	414	Pfam	Aldehyde dehydrogenase family	3	364	IPR015590	GO:0016491
Sto12g0105	414	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	172	179	IPR029510	GO:0016491
Sto12g0105	414	PIRSF	ALDH	1	370	IPR012394	GO:0006081
Sto12g0105	414	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	176	366	IPR016163	GO:0016620
Sto12g0105	414	SUPERFAMILY	ALDH-like	3	369	IPR016161	GO:0016491
Sto12g0105	414	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	2	175	IPR016162	GO:0016491

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto12g0105	Sto-Chr12	712146	714383	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto12g0105	2	409	Aldehyde Dehydrogenase Gene Family	AT4G36250	50.226	4.49e-157	450

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto12g0105	K00128		-	gmx:100817701	601.668

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Sto12g0105	12	712146	714383	Sto12g0105	12	712146	714383	ECH

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