Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto12g0102 | ATGAGTTGGAACTCGCACATGGAGGTCCATTACAATAACATCAGCTATCCCTATAACACAGCAGGAAGCTTTATTGAATATTTTGAAGGTCTAACCTACGAACATGTCAATTTCATTTTTTCTGGTGCTTCGCATGGTCAGGAGAGTCTGTACCCATCAACTACAAGTTTTTACAAGTTTGGCCCATCTGAACCTGAGAGTACTTCATACTATCAATACGGTCATGGTTATGAGGTGAATCATCATGAACCACAGATGGATGAGCATATAAGGCCTTCAGAGAACTCATCAACATTTAATGAACAGACAGCAGCAGTAAGTACGGAATGGGGTGAAGGGGTAAACACTACCACACGAGACAATTCTGTTGAATGCCCGCGAAGGCATAATAGTTCCCATGATTATCagGTCATTTGGCAAGACAATATTGATCCTGACAACATGTCCTATGAGGAACTACTTGAGTTAGGCGAGGCTGTTGGAACTCAAAGCCGTGGTCTCTCACAAGAACAGATCTCTCTGCTTCCAGTTTCAAAGTACAAGTGTGGGTTTTTCCTGCGGAAAAAATCTCGGGATGAGAGATGTGTGATTTGTCAGATGGAATATAGAAGAGGGGACAAGCGGATCACCTTACCTTGCAAACATCTCTATCATGCAGGTTGTGCGAAAACATGGCTTAGCATCAACAAAGCTTGTCCTATATGTTACACCGAGGTGTTTGCTGATACGTCAAAACACAAATAA | 744 | 0.422 | MSWNSHMEVHYNNISYPYNTAGSFIEYFEGLTYEHVNFIFSGASHGQESLYPSTTSFYKFGPSEPESTSYYQYGHGYEVNHHEPQMDEHIRPSENSSTFNEQTAAVSTEWGEGVNTTTRDNSVECPRRHNSSHDYQVIWQDNIDPDNMSYEELLELGEAVGTQSRGLSQEQISLLPVSKYKCGFFLRKKSRDERCVICQMEYRRGDKRITLPCKHLYHAGCAKTWLSINKACPICYTEVFADTSKHK | 247 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto12g0102 | 247 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 157 | 241 | IPR013083 | - | |
| Sto12g0102 | 247 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 245 | - | - | |
| Sto12g0102 | 247 | ProSiteProfiles | Zinc finger RING-type profile. | 195 | 235 | IPR001841 | - | |
| Sto12g0102 | 247 | Pfam | Ring finger domain | 194 | 235 | IPR001841 | - | |
| Sto12g0102 | 247 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 1 | 245 | IPR033276 | GO:0004842|GO:0016567|GO:0046621 | |
| Sto12g0102 | 247 | SUPERFAMILY | RING/U-box | 191 | 242 | - | - | |
| Sto12g0102 | 247 | SMART | ring_2 | 195 | 235 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto12g0102 | Sto-Chr12 | 688661 | 691421 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto12g0102 | 8 | 246 | C3H Transcription Factor Family | AT3G63530 | 42.105 | 2.41e-62 | 194 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto12g0102 | K19045 | - | gmx:100805963 | 456.062 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Sto12g0102 | 12 | 688661 | 691421 | Sto12g0102 | 12 | 688661 | 691421 | ECH | |
| Sto12g0102 | 12 | 688661 | 691421 | Sto7g1793 | 7 | 23366260 | 23369941 | ECH |