Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0101 ATGAATAGTTCCAGTTTGGGAGGTGGTTTTTTATCAGGTCCCGATGGAGGGACATTGGACCTTGAATCGCCCTTTCATAGAGGACAACATAATCAGTTGGGTCTTTCCTCAGTAACCAATCAACACCATTTGAACATGATGAGTGGTCTGGAAAATGATCACTCAGTTCGGCTGATAGATGTGAAAGGGTCAAATGCATCATTCAATTTCGGTAGAGGAAAGGCAGTCGCTCATGCTAATCCCACCAATAGTACTGACTTGAGTGAAGAGGATGAGCCAAGTCATGCTGAAGATGGAAATTGTGAGAACCATGATGGTAGGAAGAGCGGAAAGGGGTCACCTTGGCAGCGAATGAAGTGGACTGACAATGTGGTTAGGCTTCTTATATCAGTGGTGGCTTGTGTGGGTGATGATGGTACAGTCGAAGGCATCGATGGTCATAAGAGGAAAGCTGGGGTTCTacaaaaaaagggaaaatggaaaaCAGTTTCCAAGATAATGATAAGAAAGGGTTGCCGTGTGTCGCCACAGCAGTGCGAGGATAAATTTAATGACTTGAACAAGAGGTTCAAGAAGTTAAATGATTTACTTGGGAGAGGAACTAGTTGTAGAGTGGTTGAGAATCCTGCAATAATGGATTCAATGCCCAATCTATCAGCTAAGACAAAGGATGTTGTTAGAAAGATTTTGAGCTCAAAGCACTTGTTTTTCAAGGAGATGTGTGCCTACCATAATGGGCAAATAATACCCTTCTGCAGCGACCTTGATTTACAAGGCTATTCTCTGCAGCAGGGGAGGGAAACTGATTCAAGAGACAACAATGGCTCggaggaggatcctgaggaagacAATGCAAGTGAGGATGATGAGTTAGATAATGAAGGTAACAGAACTGCTTATGGGGATGGAGAGAGGATGGAGGAGTTCTCCCATAGAAAGAGATTGAATGATGAGGATGGCCATGGCTGCCCACAATCTGTTGGGCTGGAAAGTTTTCAAGCTGAAATGTCTAGGATTTTTCAAGATCCCAGGAAGTCAATGTGGGAACGAAGAGAGTGGATTCAGATACAGAAGGTGCAGCTCCTAGAGCAGAGACTCAGTTACCAAGTCCAATCTCTTGAACTTGAGAAACAACGGTTTAAGTGGCAAAGGTACTGCAGCAAGAAAGACAGAGAGCTCGAGAGGTTGAAGTTGGAGAATGAAAGGATGAACTTAGAAAATGAGCGCAGAATCTTGcaattgaagcagagggagctTGACTTAGATTTTAGGAGGTCCGAGATGTCCGTTGACCCTGCTTCTCTTCCAACTGATAGGCTGCATAGGAGGGAGCATATCGACCTCGGCAGACAGCTGTAG 1359 0.4246 MNSSSLGGGFLSGPDGGTLDLESPFHRGQHNQLGLSSVTNQHHLNMMSGLENDHSVRLIDVKGSNASFNFGRGKAVAHANPTNSTDLSEEDEPSHAEDGNCENHDGRKSGKGSPWQRMKWTDNVVRLLISVVACVGDDGTVEGIDGHKRKAGVLQKKGKWKTVSKIMIRKGCRVSPQQCEDKFNDLNKRFKKLNDLLGRGTSCRVVENPAIMDSMPNLSAKTKDVVRKILSSKHLFFKEMCAYHNGQIIPFCSDLDLQGYSLQQGRETDSRDNNGSEEDPEEDNASEDDELDNEGNRTAYGDGERMEEFSHRKRLNDEDGHGCPQSVGLESFQAEMSRIFQDPRKSMWERREWIQIQKVQLLEQRLSYQVQSLELEKQRFKWQRYCSKKDRELERLKLENERMNLENERRILQLKQRELDLDFRRSEMSVDPASLPTDRLHRREHIDLGRQL 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0101 452 PANTHER TRANSCRIPTION FACTOR TRIHELIX FAMILY-RELATED 12 426 - -
Sto12g0101 452 Gene3D - 120 192 - -
Sto12g0101 452 MobiDBLite consensus disorder prediction 1 31 - -
Sto12g0101 452 MobiDBLite consensus disorder prediction 76 116 - -
Sto12g0101 452 Coils Coil 386 422 - -
Sto12g0101 452 MobiDBLite consensus disorder prediction 264 327 - -
Sto12g0101 452 MobiDBLite consensus disorder prediction 97 112 - -
Sto12g0101 452 Pfam Myb/SANT-like DNA-binding domain 117 242 IPR044822 -
Sto12g0101 452 MobiDBLite consensus disorder prediction 291 320 - -
Sto12g0101 452 MobiDBLite consensus disorder prediction 274 290 - -
Sto12g0101 452 PANTHER F16F4.11 PROTEIN-RELATED 12 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0101 Sto-Chr12 682947 684305 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Sto12g0101 Myb_DNA-bind_4 9.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0101 - - ccaj:109806698 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0101 12 682947 684305 Sto12g0101 12 682947 684305 ECH