Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0099 ATGACCCATCCCTACCGCTCCAATGGTTGGCTTGACCTCAATAATTCTCCTTATTGCcttttttcttcatcttcatccatTAATCCACAACCCTCATCATCACCTAATTCCTCTCCTCCTTCTTCAAGACAAGCCCTTCCTCTTCTTAACCTAATTAGCCCTACCAGTACCAGCAGAGCTGATCAATCTGAAACTTGCTGTGCTGCCATGGaagtggaggaggaggaggacctagatgatgatgatgatgatgaaactgTGACGGTGGCTCTACACTTAGGGCTTCCTACTACTGATTTGGCTTCACAAAAAGGACAAGTGACTACTAATACTACTACTAGCGTAGCGTATCCCTCCTCCAGTAGTTGCAGTGATCAGTACTGGATCCCTACCCCTGCTCAGATTCTGATTGGTCCAACACAGTTCTCCTGTCCTCTTTGTTTCAAGACCTTCAACCGATACAACAATATGCAGATGCATATGTGGGGGCATGGATCTGAATACAGAAAGGGAGCAGAGTCTCTGAGAGGAACACAGCCAACAGGAATGCTTAGACTGCCATGCTATTGCTGTGCAGCAGGATGCAAGAACAACATAGAACATCCAAAGGCTAAGCCACTCAAAGACTTCAGAACCCTTCAAACCCATTACAAGAGAAAGCATGGGATCAAGCCTTTCATGTGTAGGAAATGTCACAAAGCTTTTGCTGTGAGAGGTGATTGGAGAACTCATGAGAAGAACTGTGGAAAGTTATGGTATTGCTCTTGTGGTTCTGATTTCAAGCACAAGAGATCTCTTAAGGATCATATCAAGGCCTTTGGACATGCCCACACTGCAGCTTCTGGGATTCACTCTCTTGATCAAGACGATGAAGCAGCCTCTGAgattgaacaagaaaatcaatccTTCCACTACTCCTACCTACCTacctaa 933 0.4094 MTHPYRSNGWLDLNNSPYCLFSSSSSINPQPSSSPNSSPPSSRQALPLLNLISPTSTSRADQSETCCAAMEVEEEEDLDDDDDDETVTVALHLGLPTTDLASQKGQVTTNTTTSVAYPSSSSCSDQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSEYRKGAESLRGTQPTGMLRLPCYCCAAGCKNNIEHPKAKPLKDFRTLQTHYKRKHGIKPFMCRKCHKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGHAHTAASGIHSLDQDDEAASEIEQENQSFHYSYLPT 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0099 310 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Sto12g0099 310 SMART c2h2final6 226 246 IPR013087 -
Sto12g0099 310 SMART c2h2final6 142 164 IPR013087 -
Sto12g0099 310 SMART c2h2final6 252 275 IPR013087 -
Sto12g0099 310 Gene3D Classic Zinc Finger 141 164 - -
Sto12g0099 310 Gene3D Classic Zinc Finger 185 277 - -
Sto12g0099 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Sto12g0099 310 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 22 302 - -
Sto12g0099 310 MobiDBLite consensus disorder prediction 23 45 - -
Sto12g0099 310 PANTHER ZINC FINGER PROTEIN WIP2 22 302 IPR043584 GO:0003700|GO:0010468
Sto12g0099 310 SUPERFAMILY beta-beta-alpha zinc fingers 137 165 IPR036236 -
Sto12g0099 310 SUPERFAMILY beta-beta-alpha zinc fingers 208 246 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0099 Sto-Chr12 666381 668289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0099 126 298 C2H2 Transcription Factor Family AT3G57670 87.283 8.98e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sto12g0099 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0099 - - rcu:8274422 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0099 12 666381 668289 Sto12g0099 12 666381 668289 ECH
Sto8g1282 8 8039469 8041036 Sto12g0099 12 666381 668289 ECH
Sto13g2874 13 34004881 34006435 Sto12g0099 12 666381 668289 ECH