Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0096 ATGGAGGGTATTGAGGTAATTAGAGAGGAGAGGACGGTCAAAGAGTGGAATGTGATGAATAGTGAGAGCAGCAACGAAGTTCCGAAGGTTGCGGATTTTCTAGGAGTGGGCAAGTGTGAGAATGAGTCAGATCTTGCAGCCTTTAATGAAATTCAGTCAAATCATGGTTCAGGATACCTATTCAGTAACAACACCAGTATGGTGCCGATGCAAAACTCGGTGGAGCCTCCCAATTGCAACTTGGAGTATCAGGAAAATAATAATGGTAATAGCAACTTGCAGTCATTGACCTTATCCATGGCAACTACTGCTAAGGACTCCACTTCTGAAACCACTGCCGACAATACTACAGTTCTTGACCCTGCTCCTAGAAGAACCCTCGATACCTTTGGCCAGAGAACTTCTATTTATCGAGGTGTTACAAgaCATAGATGGACTGGGCGGTATGAAGCTCATCTTTGGGATAACAGCTGTAGAAGGGAAGGTCAATCAAGAAAGGGTCGCCAAGGTGGGTATGACAAAGAGGAGAAAGCAGCTAGGGCGTACGATTTAGCTGCACTAAAGTACTGGGGAACATCCACAACTACCAACTTTCCAATCAGTAACTATGAGAAGGAATTAGAGGAGATGAAGCACATGACAAGACAAGAATTTGTGGCCGCCATACGaaggaAGAGCAGTGGATTTTCTAGGGGTGCATCAATGTATCGCGGGGTCACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATCGGGAGAGTGGCAGGGAACAAAGATCTGTACTTGGGAACATTCAGcacagaagaagaagcagcagaAGCATACGACATAGCGGCCATAAAGTTCAGAGGACTGAATGCAGTGACAAACTTCGACATGAGCCGATACGACGTGAAAGCCATACTTGAAAGCAACACACTTCCCATAGGAGGAGGGGCAGCCAAGCGACTGAAGGAAGCTCAAGCTCTGGAATGTTCCAGAAAAAGGGAGGAAATCATAGCACTTGGCTCCTCCGCCTTTCAATACGGAAGCAGCAGTAGCAGTAGCAGTAACAGGTTGATGCAGGATCAGAATGATGGAGGAGGAGGCTATATGGCCATTCCTAATTCCAATACAACGGAGCAGCTGGGATTGGTCAAGACTGAAAATTACTCCATGCCGTCCGGAGGCTACGGTGGGTGGTCGGCGGAGTCCATGCAGATGCACGCATCAAATGCAGCTCTCTTTACTATGTGGAATGAATGA 1248 0.4607 MEGIEVIREERTVKEWNVMNSESSNEVPKVADFLGVGKCENESDLAAFNEIQSNHGSGYLFSNNTSMVPMQNSVEPPNCNLEYQENNNGNSNLQSLTLSMATTAKDSTSETTADNTTVLDPAPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKELEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKEAQALECSRKREEIIALGSSAFQYGSSSSSSSNRLMQDQNDGGGGYMAIPNSNTTEQLGLVKTENYSMPSGGYGGWSAESMQMHASNAALFTMWNE 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0096 415 CDD AP2 135 201 IPR001471 GO:0003700|GO:0006355
Sto12g0096 415 ProSiteProfiles AP2/ERF domain profile. 235 293 IPR001471 GO:0003700|GO:0006355
Sto12g0096 415 Pfam AP2 domain 136 191 IPR001471 GO:0003700|GO:0006355
Sto12g0096 415 Pfam AP2 domain 236 285 IPR001471 GO:0003700|GO:0006355
Sto12g0096 415 ProSiteProfiles AP2/ERF domain profile. 136 199 IPR001471 GO:0003700|GO:0006355
Sto12g0096 415 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 13 358 - -
Sto12g0096 415 SUPERFAMILY DNA-binding domain 234 295 IPR016177 GO:0003677
Sto12g0096 415 MobiDBLite consensus disorder prediction 344 358 - -
Sto12g0096 415 MobiDBLite consensus disorder prediction 344 363 - -
Sto12g0096 415 CDD AP2 234 295 IPR001471 GO:0003700|GO:0006355
Sto12g0096 415 SUPERFAMILY DNA-binding domain 135 201 IPR016177 GO:0003677
Sto12g0096 415 PRINTS Ethylene responsive element binding protein signature 137 148 IPR001471 GO:0003700|GO:0006355
Sto12g0096 415 PRINTS Ethylene responsive element binding protein signature 275 295 IPR001471 GO:0003700|GO:0006355
Sto12g0096 415 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 13 358 - -
Sto12g0096 415 SMART rav1_2 235 299 IPR001471 GO:0003700|GO:0006355
Sto12g0096 415 SMART rav1_2 136 205 IPR001471 GO:0003700|GO:0006355
Sto12g0096 415 Gene3D AP2/ERF domain 136 201 IPR036955 GO:0003700|GO:0006355
Sto12g0096 415 Gene3D AP2/ERF domain 235 295 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0096 Sto-Chr12 642502 648484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0096 16 343 AP2-EREBP Transcription Factor Family AT1G51190 70.670 4.32e-170 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Sto12g0096 AP2 1.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0096 K09285 - gmx:100788471 532.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0096 12 642502 648484 Sto12g0096 12 642502 648484 ECH