Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0093 ATGAATTCCGGATTGACACGGTACCGATCGGCGCCCAGCTCCTATTTCTCGAATATCATTGACAAAGAGTTCTACGAGGACATGTTCAATCGCCCATCCAGCCCTGAAACCGAGCGACTTTTTTCTCGCTTTATGAATAGCCTTGCTGCTGACGCTGACGCTGACGATTCACCTTCTCAATTTCTCTCACCTGCTCCACAAAATTCTGCAGTGAAGCAAGAGATTATGCCTTCCATCAATAATGAACCCCTGGTTCTCCAGCAGCAGCacaacaatattaataataccTTTGCTTCTTCTCCTCATAGTCTTTACCAAAGTGCAGGGCGTCCACCTCTGCCAAACCACACCCTCACTTCATCGGGAATTCATCGATTGCCGCATATCAAGTCTTCTGATGCCAATAATTCCAACCTAATCAGGCATAATAGCTCACCTGCAGGCCTCTTTTCCCACATAAACATTGAAACTGGCTATGCTGCTATGAGCGGGACAGGGATGTTAGGAGCTGCTAATAGCACTAGTGAAGAACCAAACTTTTCTCCTGCCACAAGGTTGAAGAAATATTCCACAGCCCTAATGTCATCCATAGCTGAAATTGGGGACAAAAGCAACACAGAAAACAATCCAGACAGTGAATCTTTTGGTGAAAGCCAAGATAATGAGTTCATCACAGGTTTCCCCTCTTGGGATGATTCTGCAGTTATGTCTGACAACATTGctggattaaaaagatttagagatgaagatgcaaaaacaTTTCCCGAGACTCAGAATGAGACAGCAACCACCCAGCCTCGTCCTGCTCCTCTGGCTCATCACTTGAGTTTGCCAAAGACTTCAGCGGAAATGGCAGCCATTGAAAAGTTTCTTCAGTTCTCAGATTCTGTTCCCTGTAAAATTCGTGCCAAGAGAGGCTGTGCCACTCACCCCAGAAGCATTGCAGAGAGGGTTAGAAGAACTAAGATCAGTGAGCGTATGAGGAAACTACAAGATCTGGTGCCCAACATGGACAAGCAAACAAACACAGCAGACATGTTGGACTTAGCTGTCGACTACATTAAAGACCTTCAAAAGCAGGTTCAGACGCTTTCAGACAGTCATGCTAAGTGCACTTGTTCACACAAGCAGCGGCAATAA 1140 0.4395 MNSGLTRYRSAPSSYFSNIIDKEFYEDMFNRPSSPETERLFSRFMNSLAADADADDSPSQFLSPAPQNSAVKQEIMPSINNEPLVLQQQHNNINNTFASSPHSLYQSAGRPPLPNHTLTSSGIHRLPHIKSSDANNSNLIRHNSSPAGLFSHINIETGYAAMSGTGMLGAANSTSEEPNFSPATRLKKYSTALMSSIAEIGDKSNTENNPDSESFGESQDNEFITGFPSWDDSAVMSDNIAGLKRFRDEDAKTFPETQNETATTQPRPAPLAHHLSLPKTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQVQTLSDSHAKCTCSHKQRQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0093 379 Pfam Helix-loop-helix DNA-binding domain 312 358 IPR011598 GO:0046983
Sto12g0093 379 MobiDBLite consensus disorder prediction 199 221 - -
Sto12g0093 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 307 357 IPR011598 GO:0046983
Sto12g0093 379 Gene3D - 308 379 IPR036638 GO:0046983
Sto12g0093 379 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 376 - -
Sto12g0093 379 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 1 376 - -
Sto12g0093 379 SMART finulus 313 363 IPR011598 GO:0046983
Sto12g0093 379 MobiDBLite consensus disorder prediction 52 71 - -
Sto12g0093 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 371 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0093 Sto-Chr12 617290 619094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0093 2 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 43.669 7.87e-81 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto12g0093 HLH 4.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0093 - - gmx:100803833 486.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0093 12 617290 619094 Sto12g0093 12 617290 619094 ECH
Sto12g0093 12 617290 619094 Sto7g1644 7 21389610 21394326 ECH
Sto8g1267 8 7961010 7962818 Sto12g0093 12 617290 619094 ECH