Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0089 ATGCCGTCCTCAACCACCGCCGTCTCCGGTGACTTCCCCGACCACCTCGAAACGCCTATATTAGACAGAGAGTCCCCCAGTCTCCTCCACTCCATTTCCGATCATGGAGGCTATGCTTACGTCAGAATGGCCTCTCTGTCCATCGCCGGAGACTTCCGCGCAGCCGAAGCAGCTCGTGAGATGGCCTGGGAGCAGCTACACTCGGGGCCTTGGCACTCCGTCCTCCCAATTTGGCGCGACGCCTACTCTATGGCATGCCTTCACGTTGCCAAGCACCATTACATCAGTGGTGAGTTTAAGGAGGCtcttagggttttggatatggGACTCATCATGGGGGGAAGGCTTCTAAAGGAGGACTTGGACTCTGCTATTCAGAAAATATCGGAGAAGGCCATCAACATTAGGGCTTCTAAAGAAAGCTATGAAGGCTCGGTGATGTCCGAACATCCACTTGTTCATCACGAGTTTAATGAGGCTGAGGTGCTTCAACTTTTACCTGTCAACTCCCTTTCTCGTAAAATTGTGGTGAAGAGGTCTGTTTTGTCATTCGAAAGCTTCCTAAAAGATTATTTCTTGTCTGGATCCCCAGTTATCATAAGTGATTGTATGGCTCACTGGCCAGCCAAGACAAAATGGAATAACATAGATTACTTGAAAAGAGTTGCCGGTGATCGCACTGTTCCAGTTGagCATGCTTTGCAGATCGGGAAGAATTATTTATGTCCAGAGTGGAAGCAAGAGTTAATTACATTTTCAGAGTTTCTTCATAGGATAGAGTCTCATGGCTGTTCCTCTGGTGGTCCTACATATCTTGCCCAGCATCCATTATTTGATCagATAAATGAGCTTCGGAAAGATATTCATATTCCAGACTATTGTTTTGCTGGTGGAGGGGAGTTAAGATCTCTCAATGCTTGGTTTGGTCCTGCTGGTACGGTAACACCATTGCACCATGATCCACACCATAATATACTAGCTCAGGTTGTTGGGAAGAAATATATAAGGCTTTACTCTGCATCTGTGTCGGAGGAACTTTACCCATACACTGAAACCATGCTGAGAAATTCCAGCCAgATTGATCTAGATAACATAGATGAAAGGATGTTTCCCAAGGTGAAAGACTTGGAATTTGTCGACTGTATATTAGAGGAAGGTGAAATGCTATATATCCCGCCAAAATGGTGGCACTATGTCCGCTCTCTAACTACCAGTTTCTCCGTTAGCTTTTGGTGGAGTGATGTTGAATGTTCGTCTTCTTCCTGA 1266 0.4518 MPSSTTAVSGDFPDHLETPILDRESPSLLHSISDHGGYAYVRMASLSIAGDFRAAEAAREMAWEQLHSGPWHSVLPIWRDAYSMACLHVAKHHYISGEFKEALRVLDMGLIMGGRLLKEDLDSAIQKISEKAINIRASKESYEGSVMSEHPLVHHEFNEAEVLQLLPVNSLSRKIVVKRSVLSFESFLKDYFLSGSPVIISDCMAHWPAKTKWNNIDYLKRVAGDRTVPVEHALQIGKNYLCPEWKQELITFSEFLHRIESHGCSSGGPTYLAQHPLFDQINELRKDIHIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSASVSEELYPYTETMLRNSSQIDLDNIDERMFPKVKDLEFVDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSDVECSSSS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0089 421 PANTHER - 37 416 - -
Sto12g0089 421 ProSiteProfiles JmjC domain profile. 264 421 IPR003347 -
Sto12g0089 421 SUPERFAMILY Clavaminate synthase-like 182 413 - -
Sto12g0089 421 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 37 416 - -
Sto12g0089 421 SMART cupin_9 270 419 IPR003347 -
Sto12g0089 421 Gene3D Cupin 175 413 - -
Sto12g0089 421 Pfam Cupin-like domain 186 414 IPR041667 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0089 Sto-Chr12 584326 587773 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0089 170 412 Acyl Lipid Metabolism Gene Families AT3G45880 25.175 3.69e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sto12g0089 Cupin_8 1.3e-49 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0089 K24444 - gmx:100813075 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0089 12 584326 587773 Sto12g0089 12 584326 587773 ECH