Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0068 ATGGACTCCGAGGATGATATGCATGATGCCAACGATATTGAGTCCCTTGATGATGATTTCTACAGCGGTGAGACCGAGGACGCTCCTCTTGATTACTACAGTGACTACGATGACGAAGCCGATGATTACTTTGAGGATGCTGATGAATCCGACAAGATTAAATCTCGTCGCCCTGAGCAAAATTTTACTATCTTGAGGGAATCAGATATTGAGCAAAGACAGGAGGATGATATCACAAGAGTATCAACAGTTCTTTATATATCACGAGTTGATGCTAGTATCTTACTTCGTCACTATAATTGGAATGTCAGCCAAGTGCATGAAGCATGGTTTGCTGATGAAGAACGTGTCAGAAAAACAGTTGGTTTGCTAGATAAGCCAGTTGTAGAGTTTCCTAATGCTAGGGAGCTTACTTGTGGCATCTGTTTTGAAAATTATCCTTGTTCACGGATTGAATCTGCTGCTTGTGGTCATCCCTATTGCATCTCATGCTGGGAAGGATATATTGGCACATCCATTAATGATGGTCCTGGATGTTTGATGCTGAGGTGTCCTGATCCCTCTTGTGGTGCTGCTGTTGGTCAAAATATGATTAGTCTATTGGCATCTGATGAGGATAAGAAGAAGTATTCTCGTTATCTTCTTAGATCCTATATTGAGGACAACAAGAAGACCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCAGTTACATTTGATGCTGGTAATGGAAACTATGATGTTTCTTGCCTCTGTTCATATTGCTTTTGCTGGAATTGCACTGAGGAGGCACACCGTCCAGTGGACTGTGGCACTGTGGCAAAGTGGATTTTGAAGAATAGTGCAGAGTCTGAAAACATGAATTGGATACTTGCTAACTCCAAGCCCTGTCCCAAGTGCAAGCGACCAATTGAAAAAAACCAGGGGTGCATGCACATGACATGCACACCCCCttgtaaatttgaattttgctgGCTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGGACTGGTGGTTTCTATGCTTGCAATCGTTATGAGGCAGCTAAGCAAGAGGGAGTGTATGATGAAtctgaaagaagaagagaaatggcAAAGAATTCATTGGAGAGATACACACATTATTACGAGCGATGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACATCAGATGCAAACTGTCCACATTGAGAAGCTTAGTGACACACAATGCCAACCTGAGTCACAGCTTAAGTTCATAACCGAGGCCTGGCTACAGATAGTTGAATGCAGGCGAGTGCTGAAGTGGACATATGCATATGGGTACTATTTGCCGGAGCATGAGCATGCTAAAAAACAGTTCTTTGAGTACTTACAAGGTGAAGCAGAATCTGGTTTGGAGAGACTTCATCAATGTGCTGAAAAGGAATTGCAGCAGTATCTCAGTGCTGATGGTCCATCTAAAGAATTTAACGACTTTCGCACAAAGCTAGCTGGATTGACTAGCGTGACTAGAAACTACTTTGAGAATTTGGTTAGAGCATTAGAGAATGGGTTATCTGATGTGGATAGTAATGGAGCTGCTTCCAGCAAAGCAACGAGCTCAAAGAATGGTGCAGGTAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGGAACTAGTCGAATCAATAAAATGACTGATGATTCTAGTTGGTCTTGTGAGCACTGCACCTATGCAAATGGTGCATCTGTTAACACATGCCAGATGTGCCGTCAACAGCGTCGATGA 1764 0.4252 MDSEDDMHDANDIESLDDDFYSGETEDAPLDYYSDYDDEADDYFEDADESDKIKSRRPEQNFTILRESDIEQRQEDDITRVSTVLYISRVDASILLRHYNWNVSQVHEAWFADEERVRKTVGLLDKPVVEFPNARELTCGICFENYPCSRIESAACGHPYCISCWEGYIGTSINDGPGCLMLRCPDPSCGAAVGQNMISLLASDEDKKKYSRYLLRSYIEDNKKTKWCPAPGCEYAVTFDAGNGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDESERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQQYLSADGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSNGAASSKATSSKNGAGSSKGRGGRGKGTSRINKMTDDSSWSCEHCTYANGASVNTCQMCRQQRR 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0068 587 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 537 IPR031127 GO:0004842|GO:0016567
Sto12g0068 587 Gene3D - 557 587 - -
Sto12g0068 587 ProSiteProfiles Zinc finger RING-type profile. 139 183 IPR001841 -
Sto12g0068 587 MobiDBLite consensus disorder prediction 522 560 - -
Sto12g0068 587 ProSiteProfiles TRIAD supradomain profile. 135 348 IPR044066 -
Sto12g0068 587 SMART zf_4 561 585 IPR001876 -
Sto12g0068 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 219 IPR013083 -
Sto12g0068 587 SUPERFAMILY Ran binding protein zinc finger-like 559 586 IPR036443 -
Sto12g0068 587 CDD RING-HC_RBR_TRIAD1_like 139 189 - -
Sto12g0068 587 Pfam IBR domain, a half RING-finger domain 287 335 IPR002867 -
Sto12g0068 587 Pfam IBR domain, a half RING-finger domain 208 270 IPR002867 -
Sto12g0068 587 MobiDBLite consensus disorder prediction 1 46 - -
Sto12g0068 587 Gene3D - 266 521 - -
Sto12g0068 587 ProSiteProfiles Zinc finger RanBP2 type profile. 559 587 IPR001876 -
Sto12g0068 587 Pfam Ariadne domain 357 518 IPR045840 -
Sto12g0068 587 MobiDBLite consensus disorder prediction 1 58 - -
Sto12g0068 587 ProSitePatterns Zinc finger RanBP2-type signature. 563 582 IPR001876 -
Sto12g0068 587 SUPERFAMILY RING/U-box 209 277 - -
Sto12g0068 587 SMART ibrneu5 274 344 IPR002867 -
Sto12g0068 587 SMART ibrneu5 208 270 IPR002867 -
Sto12g0068 587 SUPERFAMILY RING/U-box 289 337 - -
Sto12g0068 587 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 537 - -
Sto12g0068 587 SUPERFAMILY RING/U-box 135 220 - -
Sto12g0068 587 MobiDBLite consensus disorder prediction 522 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0068 Sto-Chr12 441908 447424 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0068 17 586 ARIADNE family AT1G65430 71.280 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0068 K11968 - gmx:100810427 1077.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0068 12 441908 447424 Sto12g0068 12 441908 447424 ECH