Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0050 ATGAAAATTCAGTGCGATGTGTGTGAGAAAGCGCCGGCCTCCGTCATTTGTTGCGCCGACGAGGCCGCTTTATGTGCCAAATGCGACATTGAAGTTCATGCTGCCAACAAGCTTGCCAGCAAGCACCAGAGGCTTCTTCTTCAGTGCCTCTCCAACAAGCTTCCCACATGTGACATCTGCCAaGACAAGGCAGCTTTCATATTTTGTGTAGAAGACAGGGCACTGTTGTGTCAAGATTGCGATGAACCAATTCATTCAGCTGGAAGCCTTTCTGCCAACCACCAGCGCTTCCTTGCCACAGGCATTCGAGTAGCCTTGACTTCTAATTGCAGCAAGGACAACAAAGAAGGTCCCTTAGAGCCACCTAATCGGAATGCACAACAAGCTTCTGCCAAAATCACCTCCCAGCCTCAGCCTCAGCCTCAGCAAGTGCCTACCTTTACATCCTCTTGGGCTGTCGATGACTTGTTGGAATTCACTGACTTTGAATCACCAGACAGTACTAGTATTAACAAGGAATCACTCGAGTTTGGAGAGCTGGAATGGTTATCGGAGGTGGGTCTTTTTGGAGAACAATTCCCTGAGGAAGCCTTGGCTGCAGCTGAAGTCCCACAGCTTCCAGTGACACAAACTAGCAACGCACCCTCTTACAGACCCTCTAAGTCCTATTATATGTCTCTCAAAAAGCCTAGGATTGAATTTGAAGACGATGATGAGCACTTCACTGTGCCTGATCTTGGATGA 744 0.4839 MKIQCDVCEKAPASVICCADEAALCAKCDIEVHAANKLASKHQRLLLQCLSNKLPTCDICQDKAAFIFCVEDRALLCQDCDEPIHSAGSLSANHQRFLATGIRVALTSNCSKDNKEGPLEPPNRNAQQASAKITSQPQPQPQQVPTFTSSWAVDDLLEFTDFESPDSTSINKESLEFGELEWLSEVGLFGEQFPEEALAAAEVPQLPVTQTSNAPSYRPSKSYYMSLKKPRIEFEDDDEHFTVPDLG 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0050 247 CDD Bbox1_BBX-like 57 98 - -
Sto12g0050 247 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 247 - -
Sto12g0050 247 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Sto12g0050 247 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 247 - -
Sto12g0050 247 MobiDBLite consensus disorder prediction 121 145 - -
Sto12g0050 247 SMART bboxneu5 4 47 IPR000315 GO:0008270
Sto12g0050 247 SMART bboxneu5 52 99 IPR000315 GO:0008270
Sto12g0050 247 CDD Bbox1_BBX-like 5 47 - -
Sto12g0050 247 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Sto12g0050 247 MobiDBLite consensus disorder prediction 113 145 - -
Sto12g0050 247 Gene3D Classic Zinc Finger 1 97 - -
Sto12g0050 247 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0050 Sto-Chr12 344159 345431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0050 1 173 Orphan Transcription Factor Family AT1G06040 65.341 6.58e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sto12g0050 zf-B_box 1.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0050 - - gmx:100814727 388.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0050 12 344159 345431 Sto12g0050 12 344159 345431 ECH