Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto12g0036 ATGGGGGAGAGACGGGTTGGGGAGGAGCTCCCCCGTGGCCCCGCCGTCATTTGCATACAAAGAAGACCgTTGGAAGGAGAGGGAGCGAAGGGAAAAGACAGTGAGTATTGGACATCTCCTCGAGCCCAATTGGAGGGATCAACAACATTAGATAGTGGCGCAAGAATTTCAATTTCAGAGGAGATGCTTAACACCTTCTCTGAGCTCATGAACTTTGATACTTATGCTGGATGGTGCAATAGCTCATCAACGACAGATCCGGTTTTAGCCAATGGGCTTTCACCATTTACCTCCGTACCATATGCATCACCTGATGGATTCAATTTAATGGAGCAAAGCTGCGGGCCATTCTTTATGAGTGACGTTAATCGAAATTACAATGCTATAAGAAGTTTCTCTAGTTCCGGGGAGAAAGTTGTATTTCAGCAAATGGACACTCAACTTAGGTTCTCTGATGATGCAAATAATGCAGATAGCATTAATTCTAAACAACATATTAATGACTCTTATCAACAACTTGATAATTTAGAGATGGgcaataatataatttgtagGCCACCAGGTTGGTCGCTAGATGAGAGAATGTTGAGGGCTCTTTCCCTTTTTAAGGGATCTGCTGGTGGGGGGATCTTGGCACAAGTTTGGGTACCCATAAAGCACGGGGATAAATTCATGTTAACCACAAGTGAGCAACCCTATTTGCTTGACCAAATGCTTGCAGGATATCGTGAAGTATCAAGGACATTTACTTTCTCAGCAGAAGGAAGACCTGGTTCTTCCCCTGGACTTCCTGGTCGAGTCTTTATCTCTAAAGTTCCTGAGTGGACTTCTAACGTTGGTTACTACAGTAAATCTGAGTATTTGAGGGTTGAGCATGCAATTAACCATGAGGTTCGTGGATCAATTGCTGTTCCAGTATTTGATATTGAATCTGAAATGCCATGCTGTGCTGTACTGGAACTTGTCACTACAAAGGAAAAGCCTGATTTTGATAGAGAACTGGAAATTGTTTGTCATGCACTCCAGGTTGTAAATTTAAGGACTACTATGCCTCTACGGCTTCAACCCCAGTGTCTCTCAAATAACAAAAGAGCTGCTTTGATAGAGATAGTTGACGTGTTACGAGCTGTGTGTCATGCACATAGTTTGCCCCTGGCATTGACATGGATTCCCTGTTGTTACACTGAGGGAACGGGTGATGAAATTACAAGAATACAAATTAAAGAGGGTCATTCAAGTTCTCGTGAGAAATGCATACTATGCATTGAAGAATCAGCTTGTTATTTAAATGATAGAGTGATGGAAGGATTTGTTCATGCATGTGCAGAACATCATCTTGAGGAAGGGCAAGGTATAGCTGGGAAAGCAATTCAGTCAAATCATCCATTCTTCTATCCTGACGTGAAGGAATATGATATTGGTGAATATCCACTTGTTCAACATGCacgaaaatataatttaaaagctGCAGTTGCAATCAGGCTAAGGAGTACCTTAACTAATGATGATGATTACATATTAGAATTCTTTCTACCTGTTAATATGAGAGGGAGTTCAGAACAGCAACTTTTATTAGACAACCTTTCAGGTACTATGCAGAGAATCTGTAGAAGTTTAAGGACAGTTACAGATGCTGAATTATCAGGAACATCAGGGTCGCAGGTagaatttcaaaatgaaaaagtaTGTGGTTTTTTGCCCATGTCTAGGATAAACTCTCAAACAGAATTAACAGATGGTGATCATGACTTAGTCAGGGAGAGTCCCTGGAAGGTTTCCAACCTGAGAAATGATGGAATTGAAGCTGCTCATAACCAGGCAATGAGTGGAACAAGAAAGCAGGTCGAGAAAAAGAGAAGTACAGCTGAGAAGAATGTCAGTTTGAGTGTTCTCCAGCAGTACTTTTCTGGTAGTTTAAAGGATGCAGCAAAGAGCATTGGTGTTTGCCCTACAACTCTAAAAAGGATATGCAGGCAACATGGCATTTCAAGATGGCCATCccgtaaaataaataaagtgaatCGCTCATTAAAGAAAATTCAGACTGTGCTTGACTCTGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGACCCATCTACAGGGGGTTTTGTGGCAGGAGGTTCAATCACTCAAGAATTTGATGCACATGGTAATATTTTGTTCCCTGAGAAGAGTATGCCTGTACAAGATACAAAAGATGCAGTTTCAGTACCTCCATTACCTTGTAATGAAGGTGAGAACTCAGCTATTAAGTTGGAGGACAATGATGTTTATCTGGCAGGTACTATCCAGCCCATGCACTCAAGAGGTGTACCTGTCCAAAATTCTAGCGAGGGTGAATTGAAGAAAGCCCATGCTTGTTCTGTTGATTGTAATGCAGATTCAACATCAATGGCCTTGGACAATGGATCATGCCAGACAGACAAGGGTCAAGAATGTCCTGAGCAAGCATGTCTGGGTTCAGTTCCTGCAAAAGAAGGAAGGAACGAGGATGGTCTGGGAGTTAAAAATTCTAGCCGTGATATTATCTCTTGGAGTTCAAGCTCCTTGATTGCTGATGAGATGGAAAATGTGGTGGATGGGGACAATGGGGTTGTTGAACATAACCACCCTGCTTCTTCAAGTATGACAGACTCATCCAATGGCTCTGGCTCAATGATCCATGGTAGTTCGTCAGGCTCTCAAAGCTTTGAGAATCGGAAGCATTCCAAAGTCAAATCAACCTTGGACAATGGAGCATCAAAACTTATAGTGAAAGCTACCTATAAAGAGGATACCATACGTTTCAAGTTTGATCCATGTGCAGGTTGTTTCCAACTATACGAAGAAGTAGGAACAAGATTCAAATTACAAAATGGAACATTCCAGCTTAAATATCTAGACGATGAAGAGGAATGGGTAATGTTGGTAAATGACTCGGATTTGCAGGAGTGCATAGAAATATTGGAAGAGATTGGCAGCCGTAGTGTGAAGTTTCAAGTGCGTGATATACCTTGCTTCTTAAGCAGCTCTGGTAGTAGCAGTTGCTTCTTGGGAGGTTCATAG 3045 0.4115 MGERRVGEELPRGPAVICIQRRPLEGEGAKGKDSEYWTSPRAQLEGSTTLDSGARISISEEMLNTFSELMNFDTYAGWCNSSSTTDPVLANGLSPFTSVPYASPDGFNLMEQSCGPFFMSDVNRNYNAIRSFSSSGEKVVFQQMDTQLRFSDDANNADSINSKQHINDSYQQLDNLEMGNNIICRPPGWSLDERMLRALSLFKGSAGGGILAQVWVPIKHGDKFMLTTSEQPYLLDQMLAGYREVSRTFTFSAEGRPGSSPGLPGRVFISKVPEWTSNVGYYSKSEYLRVEHAINHEVRGSIAVPVFDIESEMPCCAVLELVTTKEKPDFDRELEIVCHALQVVNLRTTMPLRLQPQCLSNNKRAALIEIVDVLRAVCHAHSLPLALTWIPCCYTEGTGDEITRIQIKEGHSSSREKCILCIEESACYLNDRVMEGFVHACAEHHLEEGQGIAGKAIQSNHPFFYPDVKEYDIGEYPLVQHARKYNLKAAVAIRLRSTLTNDDDYILEFFLPVNMRGSSEQQLLLDNLSGTMQRICRSLRTVTDAELSGTSGSQVEFQNEKVCGFLPMSRINSQTELTDGDHDLVRESPWKVSNLRNDGIEAAHNQAMSGTRKQVEKKRSTAEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSTGGFVAGGSITQEFDAHGNILFPEKSMPVQDTKDAVSVPPLPCNEGENSAIKLEDNDVYLAGTIQPMHSRGVPVQNSSEGELKKAHACSVDCNADSTSMALDNGSCQTDKGQECPEQACLGSVPAKEGRNEDGLGVKNSSRDIISWSSSSLIADEMENVVDGDNGVVEHNHPASSSMTDSSNGSGSMIHGSSSGSQSFENRKHSKVKSTLDNGASKLIVKATYKEDTIRFKFDPCAGCFQLYEEVGTRFKLQNGTFQLKYLDDEEEWVMLVNDSDLQECIEILEEIGSRSVKFQVRDIPCFLSSSGSSSCFLGGS 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto12g0036 1014 ProSiteProfiles PB1 domain profile. 915 997 IPR000270 GO:0005515
Sto12g0036 1014 Pfam PB1 domain 918 996 IPR000270 GO:0005515
Sto12g0036 1014 MobiDBLite consensus disorder prediction 868 898 - -
Sto12g0036 1014 Gene3D - 913 996 - -
Sto12g0036 1014 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 28 1010 - -
Sto12g0036 1014 MobiDBLite consensus disorder prediction 863 906 - -
Sto12g0036 1014 Pfam RWP-RK domain 625 673 IPR003035 -
Sto12g0036 1014 SUPERFAMILY CAD & PB1 domains 911 999 - -
Sto12g0036 1014 SMART PB1_new 915 997 IPR000270 GO:0005515
Sto12g0036 1014 PANTHER PROTEIN NLP8 28 1010 IPR045012 GO:0003700
Sto12g0036 1014 CDD PB1_NLP 916 996 IPR034891 -
Sto12g0036 1014 ProSiteProfiles RWP-RK domain profile. 605 693 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto12g0036 Sto-Chr12 258194 269986 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto12g0036 36 1012 NLP Transcription Factor Family AT2G43500 49.442 0.0 829
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Sto12g0036 PB1 9.3e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto12g0036 - - aprc:113864503 1329.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto12g0036 12 258194 269986 Sto12g0036 12 258194 269986 ECH