Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2487 ATGCCTCAAAGAACTGTATTTTGTTTACTCACTTATGCCTTTGATTTGTTTGAGGAAATGCCTCAAAGAACTGCATTTTATTTACTCACTTATGCCTTTGATGTGTTTGAGGAAATGCCTCAAAGAACTGTGCCTCCTAACTCATGCAGTGTTCCAAACACTTACTTGTTATTACATATAAGAAAGAACCTGCCACATCTATTTCTTCCTTTGGCTTGTGCTGCTAATGTAGTACAGaaTGTTGCTGTTGTGACATCAACATCAACCAGGATGCCCATTTACAAAGCCTTTGCTAAGGGAGAAAATATAGGGGATGTCACTGCTAAAGGAGAATGTGTTGGCAATATTGCAGACTTGAAAGAGAATTCATGCCGAGCCTGTGGGGGAAATGGAAATCTTCTTAGCTGTGAAACATGTACATATGCTTACCATCCGAAATGTTTACTTCGACCACTTAAAGCTCCTTTTCTAGACAATTGGAGGTGTCCTGAATGTGTTGGCCCAATGATATTGAAATGA 519 0.3931 MPQRTVFCLLTYAFDLFEEMPQRTAFYLLTYAFDVFEEMPQRTVPPNSCSVPNTYLLLHIRKNLPHLFLPLACAANVVQNVAVVTSTSTRMPIYKAFAKGENIGDVTAKGECVGNIADLKENSCRACGGNGNLLSCETCTYAYHPKCLLRPLKAPFLDNWRCPECVGPMILK 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2487 172 Pfam PHD-finger 124 166 IPR019787 -
Sto11g2487 172 PANTHER RUS1 FAMILY PROTEIN C16ORF58 63 119 IPR006968 -
Sto11g2487 172 SUPERFAMILY FYVE/PHD zinc finger 120 168 IPR011011 -
Sto11g2487 172 SMART PHD_3 123 166 IPR001965 -
Sto11g2487 172 Pfam Vitamin B6 photo-protection and homoeostasis 62 119 IPR006968 -
Sto11g2487 172 ProSiteProfiles Zinc finger PHD-type profile. 121 168 IPR019787 -
Sto11g2487 172 PANTHER PROTEIN ROOT UVB SENSITIVE 6 63 119 - -
Sto11g2487 172 ProSitePatterns Zinc finger PHD-type signature. 124 165 IPR019786 -
Sto11g2487 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 168 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2487 Sto-Chr11 27844346 27846036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2487 96 171 EF-hand Containing Proteins AT5G22760 34.940 2.36e-06 45.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sto11g2487 DUF647 9.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2487 - K11643 csat:104725484 99.3673