Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2368 ATGTCTAGCTGTTCGTCGCCGTCGCCATCGGGATCGCTTGTGTCTATGGGCGAATTAGAGAGCTCAAATACGACGACGCTTCAGCAGCGTCTCCAATTCATATTGCACAGCCGTGCTGAGTGGTGGGCGTACAGCATCTTCTGGCAAGCTTCTTCCAAAGACAGCGATGATAGTAATAATCACTGTCCTAATATGCGACCAAAAGTACTAAAATGGGGGGATGGCCACTTCCGTGGTGACAAGGAAAACAATAAGAGTCGTCACCAAGAGTGGCGATTCCCTAATTGCGTGGATGGTGTGACTGAGTTGGAATGGTTCTACACGGTGTCGGTCACACGGTCATTCGCCCCCGGCGATGGCGCGGTGGGCCGCGCCTTTAGCTCGGCCACGCACGTGTGGCTCGCCGGAGAGAgcgagttcctgttgcactcacaCGAGTGCGAAAGAATTAGAGAAGCCGCCACTCATGGGGTCAAAACTCTCGTGTGCATCCCCACTGCTAGTGGAGTGCTTGAGCTTGGTTCCTCTGAAACGATCGTCCAAGATTGGAGCCTCCTCCAATTGGCCCAATCAGTCATGACCAGTAATAATTGGGACTCTGATGTGTCTCGGGAGGCCCAACCAATGAGAAGAAAAACAGGGAAAAATGAAAATCCAGTGAAGTCGTCCGCCTCTGATCAATTACTAATGCCTCTAAACCACGTGGAAGCTGAGAGGCAGCGACGAGAGAGACTGAATCAGAGATTCTACGCGCTTCGTTCTGTCGTTCCCAACGTGTCCAAAATGGACAAAGCGTCTTTGCTTTCGGACGCTGTGGCGTATATCAACGAATTGAAAGCCAAAATCGAGGAGCTAGAGGGCAGATTTAAAATGCAAAATAGCAAGAAATTAGtggacgaagaagaagaagctgccACGTCAGTGCATTCATCGAGTAGTAATTGTAGAAGTAATACGGTGGGAGGAGTTGAGGTGAATATTGTGGGTACGGAGGCCATGATAAGGGTTCAATGTTTGGATGTGAATCACCCGGCTGCGAGGTTGATGGATGCTCTTAGAAAGCTTGATTTGCATATTCACCATGCGAGTGTATCAAGAGTCAAAGATTTGATGCTGCAAGATGTTGTGGTGACCATGGCAAATTGGCATCTTCAAAATAACGATCCAGTTCAGATTTTACAGTGGAACAACTTGAACTACTATGAAGAAATTGCACCAAATTTGCCATGCCACTTTCTTCATCTATACCCTTATCACCATCTAAATTCAATGCAGATGCAGATGCAGAAGCAGAAATATGTGATGAAGATTCACTTGTGTTATGATTAG 1329 0.4582 MSSCSSPSPSGSLVSMGELESSNTTTLQQRLQFILHSRAEWWAYSIFWQASSKDSDDSNNHCPNMRPKVLKWGDGHFRGDKENNKSRHQEWRFPNCVDGVTELEWFYTVSVTRSFAPGDGAVGRAFSSATHVWLAGESEFLLHSHECERIREAATHGVKTLVCIPTASGVLELGSSETIVQDWSLLQLAQSVMTSNNWDSDVSREAQPMRRKTGKNENPVKSSASDQLLMPLNHVEAERQRRERLNQRFYALRSVVPNVSKMDKASLLSDAVAYINELKAKIEELEGRFKMQNSKKLVDEEEEAATSVHSSSSNCRSNTVGGVEVNIVGTEAMIRVQCLDVNHPAARLMDALRKLDLHIHHASVSRVKDLMLQDVVVTMANWHLQNNDPVQILQWNNLNYYEEIAPNLPCHFLHLYPYHHLNSMQMQMQKQKYVMKIHLCYD 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2368 442 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 27 191 IPR025610 -
Sto11g2368 442 PANTHER TRANSCRIPTION FACTOR MYC2-LIKE 21 381 - -
Sto11g2368 442 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 232 291 IPR036638 GO:0046983
Sto11g2368 442 MobiDBLite consensus disorder prediction 199 223 - -
Sto11g2368 442 Coils Coil 268 295 - -
Sto11g2368 442 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 229 278 IPR011598 GO:0046983
Sto11g2368 442 PANTHER MYC 21 381 IPR045084 GO:0003700|GO:0006355
Sto11g2368 442 Pfam Helix-loop-helix DNA-binding domain 233 278 IPR011598 GO:0046983
Sto11g2368 442 Gene3D - 231 294 IPR036638 GO:0046983
Sto11g2368 442 SMART finulus 235 284 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2368 Sto-Chr11 22889427 22897850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2368 27 367 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 38.172 9.75e-68 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto11g2368 bHLH-MYC_N 4.7e-39 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2368 - K13422 pop:7477819 324.709