Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2306 ATGGAATCATTTTGTCATCACGAGAATGGTGGTCAACGTGTGAGTAAAAGCAAAAGGCAATACATTGCTCATGATGATGAGCAAAAATCATTTTCTAACAAAGCTTTATATTTGACTTCGTATTTGGAATTGAAGACACGTGCTATTGGCACAGATGGGCACTTCTATGAGTGTGTGAAGTGTGAAGAGGTTGGAAATTTATTGTGCTGCGACACATGTGCTTGTACTTATCATCTCCATTGCCTTAGTCCACCTCTAGAGTGTGTTCCTAAAGAAGATTGGCAATGCCCTAATTGCTATAACATTGACAACCTTTCTGAGGATGTAATGACTTCATATTTGAATTGTTCTTTATGTTCAAAGATCAAGAAGATATTAATCTCGAGTGATCATAAGGAAGAAATATCAAAATCTTGTTCTACTAACCAGCCCAACTTATCGAATGGATTTTATAAACGTGTAACAAAATATCATGGAGGGCCTTCATTTTCTGGCGTTGACATTGATGTTAGTAATCTTTCGATTCTAAGGGCTAAGCATGATTCCAgacaaaaaggaaaaggaattaTGAAGAACACTCCTCGCAATAAAAAAGGGACCTGTTCAAGTTTAAAAGTAAATGTGCAAATGCGAAGTTCAAATCTTCAAGTGgtcaaatatggtgaaaatgtTCGATTTGATGCTTTAGCAAAAAAGGGAATAGGTGCTCAACGTTCAACTTTAATGACTTCGAGTTGTGAGGATATCACCATTCCGAGTACTTTGTTATCCAAAAAGAATGGAGCTGATACATCAGGTCATGCATCAAGTAAATCATATGGTAAAAACATTGACACTTTGCCTACTTCAGTAGAGAAAGTCACTTGGTCTGGATTCGAACTGGATGCTCTATGGGTTGGTGTTCGCCGATATGGTCAAGAGAATTGGGACACCATTTTGGCTGATTCATCTATGAGTGTTCTGAAGTACAAAACCCCTCaagatttgagaatgaaatGGAAAGAGGAGCTTCACAAAATACTCTCATCATTTCAAAAAGCAACACCAATAGGCATAATGGAAACTCCTCCATTTGCTTCTTCTTCAAGAGCTTGTCCTTCATTCCCAAAGGCTCATAATGATGGtacttataataattataatatttcgtCTTGTAATTTGGTACCAAATAAGCCCAAGTTGTTGTTAGCTGGTCATTTCCCAATTAATCTAAGTGATGGGCCCAACAATACCAAGGAAATCCTTCTTTCAAGTAGAGGCATGGAGATTGAAGAGAAAGACTAA 1284 0.3575 MESFCHHENGGQRVSKSKRQYIAHDDEQKSFSNKALYLTSYLELKTRAIGTDGHFYECVKCEEVGNLLCCDTCACTYHLHCLSPPLECVPKEDWQCPNCYNIDNLSEDVMTSYLNCSLCSKIKKILISSDHKEEISKSCSTNQPNLSNGFYKRVTKYHGGPSFSGVDIDVSNLSILRAKHDSRQKGKGIMKNTPRNKKGTCSSLKVNVQMRSSNLQVVKYGENVRFDALAKKGIGAQRSTLMTSSCEDITIPSTLLSKKNGADTSGHASSKSYGKNIDTLPTSVEKVTWSGFELDALWVGVRRYGQENWDTILADSSMSVLKYKTPQDLRMKWKEELHKILSSFQKATPIGIMETPPFASSSRACPSFPKAHNDGTYNNYNISSCNLVPNKPKLLLAGHFPINLSDGPNNTKEILLSSRGMEIEEKD 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2306 427 SUPERFAMILY Homeodomain-like 285 339 IPR009057 -
Sto11g2306 427 CDD SANT_TRF 289 334 - -
Sto11g2306 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 48 101 IPR013083 -
Sto11g2306 427 ProSiteProfiles Zinc finger PHD-type profile. 55 102 IPR019787 -
Sto11g2306 427 CDD PHD2_CHD_II 58 99 - -
Sto11g2306 427 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 16 141 - -
Sto11g2306 427 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 217 354 - -
Sto11g2306 427 SUPERFAMILY FYVE/PHD zinc finger 50 100 IPR011011 -
Sto11g2306 427 PANTHER PROTEIN CHROMATIN REMODELING 4 16 141 - -
Sto11g2306 427 PANTHER PROTEIN CHROMATIN REMODELING 4 217 354 - -
Sto11g2306 427 MobiDBLite consensus disorder prediction 181 200 - -
Sto11g2306 427 Gene3D - 289 356 - -
Sto11g2306 427 ProSiteProfiles Myb-like domain profile. 281 337 IPR001005 -
Sto11g2306 427 SMART PHD_3 57 100 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2306 Sto-Chr11 22172196 22183620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2306 48 180 PHD Transcription Factor Family AT4G14920 28.859 3.60e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2306 - - fve:101294831 98.2117