Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2299 ATGGAATTGAGAAATTTTGCACTGATTGAAATTGATAAACTGTTACGCAACAATGAAAGAACTTTAATGGATTTCCCTCCTTTGCCTGTACCAAATGGCAATAGTATTTCTAACTTGCAGAATCAATTGAtcttagataaattaaattttgacaagGAGGAGTTAGCTGTTGAATCAGCTCATCTAATTTCTAAAATGACTAATAAACAGAAGTACATTTTTTACCAGATTATGCATTCAACTTCTACACCTAACGGTGGTGTCTTTTTTGTTCATGGTTATGGAGGCACTGGTAAAACATATATTTGGAGAGCTTTGACTGCTACACTGAGAGCAGCTGGCCATATTGTTCTGACTGTAGCATCGAGTGCAGTTGACAAGTCATTACGAGACATCCTCCAATTAGATAATCCTAATAGCTTAAATATTCCTTTTGGAGGAAAAGCTATTGTTCTTGCAGGTGACTTCAGGCAAATCTTGCCAAATATGAGGTTGCGGTCTCAAAGTTCTAGCCACAATGAAGATGAGGTGAAAGAATTTGCATATTGGCTTCTAAATGTTGGAGAAGGGAAAGTTAATGAACCAAATGATGGTGAAGTTGAGATAGAAATACCCAACAAACTTTTGATCACTGATTTCAATGATCCCATTGCTGCAATTATTTCAAGTACATACCCATCTTTGCAAGAAAATTATATCAATGCAAAGTACTTGAAGGATAGGACCATACTTGCTCCTACACTTGAAATTGTTGAAGAAGCCTTTATAATGGTACAAGGCTCATTGTCTCTCAACTGGGCAACCATGTCATTGAAGCTAAAGTTATCAATGGAAGTCATTATGGTCAAAAGTAGGATGGCTTCATCAGAAAAAGTTGATCCTATTTCAGCAATTCATCCTGACAAAGAGACATGGAAAATCCGTGCAAGAGTGGGAAGAAAGATTCAAGTTTCTATCACACTTAAAGAATTAGTTAATAAGTACTTAAACCAATTGGTAGAAGGGCAAAGCTACAAGTTCCAAAACTTCAATGTGGCCCATTACATTGGAGAATTTAGACCTACAAAGCATAACTATAGGATCAACTTCAATGGTGCCACTGGTGTTCAACCTTGTGAGAGTGCCGCAATTCCTCTATATGCATTTGACTTTGTACCAATTGCAGACattatagaaaagaaaaatgatgaagGTTACTTGGTTGGTAACAAACAACATGTAAAATGTGTACTCTTTGGTGACTATGCCCAAGCTGTACATGATTACATGATGCAATCAATAGAGGCTATTGTTGTTGTAATTTTACAACTTGCACGGGTGAAAGAATTCAAAGaaaagaGAATGGTTGTTGTGCCCATCTTGCAACAAAACACCTCCAGTGATCATtccaagGAATATAATGCACAAGAAGATGATAACAACTTTGGTGATTGTGAAGAACTTGGAAGAACATCcGAAGTTGCATATGTAATCTCAGAAAATGAAACTTATCATTGTTTGACCAGTAACATTATGCCATCCAAGAGAGCCTCGCCAGATGATGTGCAAATAGTTGGACTGGTAGAAATGCTTACTCCACAAATGTCTTCTACAAAGCCAATCAAGCAAATTAAGAAGGAAAAGTTTGAGTGA 1632 0.3572 MELRNFALIEIDKLLRNNERTLMDFPPLPVPNGNSISNLQNQLILDKLNFDKEELAVESAHLISKMTNKQKYIFYQIMHSTSTPNGGVFFVHGYGGTGKTYIWRALTATLRAAGHIVLTVASSAVDKSLRDILQLDNPNSLNIPFGGKAIVLAGDFRQILPNMRLRSQSSSHNEDEVKEFAYWLLNVGEGKVNEPNDGEVEIEIPNKLLITDFNDPIAAIISSTYPSLQENYINAKYLKDRTILAPTLEIVEEAFIMVQGSLSLNWATMSLKLKLSMEVIMVKSRMASSEKVDPISAIHPDKETWKIRARVGRKIQVSITLKELVNKYLNQLVEGQSYKFQNFNVAHYIGEFRPTKHNYRINFNGATGVQPCESAAIPLYAFDFVPIADIIEKKNDEGYLVGNKQHVKCVLFGDYAQAVHDYMMQSIEAIVVVILQLARVKEFKEKRMVVVPILQQNTSSDHSKEYNAQEDDNNFGDCEELGRTSEVAYVISENETYHCLTSNIMPSKRASPDDVQIVGLVEMLTPQMSSTKPIKQIKKEKFE 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2299 543 Gene3D - 34 128 IPR027417 -
Sto11g2299 543 Gene3D - 312 374 IPR012340 -
Sto11g2299 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 162 IPR027417 -
Sto11g2299 543 CDD RPA1_DBD_A_like 312 367 - -
Sto11g2299 543 Pfam Domain of unknown function DUF223 311 399 IPR003871 -
Sto11g2299 543 PANTHER ATP-DEPENDENT DNA HELICASE 2 123 - -
Sto11g2299 543 PANTHER ATP-DEPENDENT DNA HELICASE 127 338 - -
Sto11g2299 543 PANTHER UNCHARACTERIZED 2 123 - -
Sto11g2299 543 PANTHER UNCHARACTERIZED 127 338 - -
Sto11g2299 543 Pfam PIF1-like helicase 66 125 IPR010285 GO:0000723|GO:0003678|GO:0006281
Sto11g2299 543 Pfam PIF1-like helicase 162 254 IPR010285 GO:0000723|GO:0003678|GO:0006281
Sto11g2299 543 SUPERFAMILY Nucleic acid-binding proteins 292 374 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2299 Sto-Chr11 22056892 22061740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2299 284 396 Core DNA Replication Machinery Family AT5G45400 24.113 1.11e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2299 - K15255 ini:109150379 214.927