Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2193 ATGGCCTCTAAGCGGATTTTGAAGGAGCTCAAGGATCTCGAGAAAGATCCTCCTACTTATTGCAGTGCTGGTCCAGTGGCTGAAGACATATTTCATTGGCAAGCTACATTTATGGGTCCTCCTGACAGTCCCTATGCTGGTGGAGTATTTCATGTCATTGTTCAATTTCCTCCAGAGTATCCCTTTCAACCTCCCAAGGTTTCTTTTCGGACAAAGGTGTTTCACCCCAATATTAACCCCAAAGGGAGCATATGTCTTGACATATTGAAGGAGCAATCGAGTCCTGCACTAACAATATCAAAGGTTTTGCTCTCGATCTGCTCTCTCTTAACAGACCCTAATCCTGATCATCCTCTAGTGCCAAGGATTGCCAACATGTACAAGAATGACAGGAGCAGGTATGATTTCCTAGCAAGAAGATGGACCCATAAGTATGCTATGGGGTGTCTTATGTTGGTGTCTGTAACTCAAAGCTCAgccacacccaccacccaccatgtgGGAGGCGACTATGGTTGGAAAATGCCTACTTACCCAACATTCTACCAGGATTGGGCCAAGAAGTCCACTTTTGCTGTTGGCGACTCTCTTCATTTCCGGTATGAGCCAGGAATGAGCACAGTTGTGAGCGTTACTAAAGAAGACTACGACCATTGCACTTCTAGGAATACATTGTACACATATTTCAATGGGGATACTACAATTTTGTTGGATAAACCAGGCCAATATTACTACTTCAATAACATCGGCAAGCATTGCGAGACTGGCCAAAAGCTTTGGGTGACCGTCAATTAA 795 0.4264 MASKRILKELKDLEKDPPTYCSAGPVAEDIFHWQATFMGPPDSPYAGGVFHVIVQFPPEYPFQPPKVSFRTKVFHPNINPKGSICLDILKEQSSPALTISKVLLSICSLLTDPNPDHPLVPRIANMYKNDRSRYDFLARRWTHKYAMGCLMLVSVTQSSATPTTHHVGGDYGWKMPTYPTFYQDWAKKSTFAVGDSLHFRYEPGMSTVVSVTKEDYDHCTSRNTLYTYFNGDTTILLDKPGQYYYFNNIGKHCETGQKLWVTVN 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2193 264 Gene3D Ubiquitin Conjugating Enzyme 1 149 IPR016135 -
Sto11g2193 264 Pfam Plastocyanin-like domain 173 257 IPR003245 GO:0009055
Sto11g2193 264 PANTHER BNAA01G32320D PROTEIN 3 218 - -
Sto11g2193 264 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 74 89 IPR023313 -
Sto11g2193 264 Pfam Ubiquitin-conjugating enzyme 5 140 IPR000608 -
Sto11g2193 264 SUPERFAMILY Cupredoxins 162 263 IPR008972 -
Sto11g2193 264 SUPERFAMILY UBC-like 2 148 IPR016135 -
Sto11g2193 264 Gene3D - 162 264 IPR008972 -
Sto11g2193 264 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 218 - -
Sto11g2193 264 ProSiteProfiles Phytocyanin domain profile. 163 264 IPR003245 GO:0009055
Sto11g2193 264 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 147 IPR000608 -
Sto11g2193 264 CDD UBCc 3 142 IPR000608 -
Sto11g2193 264 SMART ubc_7 4 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2193 Sto-Chr11 20858850 20882948 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2193 158 263 Phytocyanin Superfamily AT2G25060 41.667 5.39e-23 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2193 K06689 - twl:119981290 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g2193 11 20858850 20882948 Sto11g2193 11 20858850 20882948 ECH