Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2103 ATGAAGACGAACCACCGCACCTTCCGCAGCAGCAGCAACAACCTTCTGCTTCTGAGGAGAATCGGTTCGAAGAGAGCTGACGGAGAAGAGGAACAGCCCCAACATGAAGACGCCAAGCCGATTGGTGATGCCATTAGGTTTTCGGGAAAAGGAAGAGGGAGGAGGAAGCATTACGAGTCTTTCGAGTATGATGGGAATCAATATGTAGTTGTGAGTTTTACTGAGGATCCAGTACTTCTTGTCCCTGAGGATAAAGGCCAAAAGCCATATGTGGCAATTATTAAGGACATTATACAGTCCCAAAATGGCAGTATGATGGTAACAGGGCAGTGGTTTTATCGTCCTGAAGAAGCAGAAAGAAAAGGTGGTGGAAACTGGCAATCTCATGATTCGAGGGATCTGTTTTATAGTTTCCACCGTGATGAGGTTCCTGCAGAGTCTGTTATGCATAAATGTGTGGTGCATTTTGTTCCCATCCAGAAACAGCTTCCAAATCGTAAACAGCATCCGGGGTTTATTGTGCAAAAGGTGTATGACTTCGTAGAAAAAAAACTCTGGAAGCTAACTGATAAAGAATACGAGGAAACTGAGCAGCAAGAAATTGATGATCTTGTTCAGAAAACTCTAGAACGTTTGGGTGATCTACCAGACATTGAAGCTGAAGATACCCTAGCTGATAAGGAGGatcagatgaaaaaaaaaagaggcttGAAGAGAAAGAATATTTCACCCCTTAATGTTTCAAGGGAGGAGAAAGAAACTCCCAGTCCCAAGAATGACCAGAATCTGAAATCTACCACTCCAGGAAGTTGTGTAAATACTGATTCAGAGCATTATTGcatattatcaaaatttaagGCACTGACTGGAGATACACGTCGTGACAAATGGTTGGAGAAATTGCTTCAAACTGTTCAGGGCATATGTATTTCTGATGACAGCAGACTAAGGGATGACAAAGGAGATGACAAGTCCGATGCAGTCCATAGTGGAAGCAATAAAGGAAGTTTAGAAATCGCAAATGAATGTCAAGACAAGGGTCAGAAGAGTTCCAAGTTTTTTATCTGGCCTGACTCAGCTGTTCCAGCCATAGTTGCTTTGGAAAAAGCTTCACATGATGCTCTTTCCACAGATTATATGAAGTATAACCAAAAGTTAAGGACATTATATTTTAATCTCAAGGGAGGTACATTGTTAGCACATCGTCTATTAAATGGAGAGTTGGAACCTCCAAAAATGATCAATTTGTCATCTATTGAATTAAAGAAGGGTATGACCGctgaagaaatagaaaaggagCAGCAGAAGCAGCTTGGGAATTTCATTCACTACATGGCTACATTCGTTTCTGGATTCGTCGTAGGTTTCACGGCTGTTTGGCAATTAGCTCTCGTCACTCTCGCCGTGGTTCCGATGATAGCTGTAATCGGAGGCATTCACACCACCACGTTAGCCAAGCTCTCCGGCAAGAGCCAGGAAGCTCTCTCTCAAGCTGGCAACACTGTGGAATAG 1512 0.4153 MKTNHRTFRSSSNNLLLLRRIGSKRADGEEEQPQHEDAKPIGDAIRFSGKGRGRRKHYESFEYDGNQYVVVSFTEDPVLLVPEDKGQKPYVAIIKDIIQSQNGSMMVTGQWFYRPEEAERKGGGNWQSHDSRDLFYSFHRDEVPAESVMHKCVVHFVPIQKQLPNRKQHPGFIVQKVYDFVEKKLWKLTDKEYEETEQQEIDDLVQKTLERLGDLPDIEAEDTLADKEDQMKKKRGLKRKNISPLNVSREEKETPSPKNDQNLKSTTPGSCVNTDSEHYCILSKFKALTGDTRRDKWLEKLLQTVQGICISDDSRLRDDKGDDKSDAVHSGSNKGSLEIANECQDKGQKSSKFFIWPDSAVPAIVALEKASHDALSTDYMKYNQKLRTLYFNLKGGTLLAHRLLNGELEPPKMINLSSIELKKGMTAEEIEKEQQKQLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTTTLAKLSGKSQEALSQAGNTVE 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2103 503 MobiDBLite consensus disorder prediction 24 50 - -
Sto11g2103 503 SMART BAH_4 66 189 IPR001025 GO:0003682
Sto11g2103 503 MobiDBLite consensus disorder prediction 316 336 - -
Sto11g2103 503 CDD BAH_plant_3 48 198 - -
Sto11g2103 503 Gene3D - 275 423 IPR036575 GO:0006351
Sto11g2103 503 SMART mid_6 326 431 IPR003618 GO:0006351
Sto11g2103 503 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 438 503 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto11g2103 503 MobiDBLite consensus disorder prediction 220 235 - -
Sto11g2103 503 SUPERFAMILY ABC transporter transmembrane region 436 502 IPR036640 GO:0005524|GO:0016021
Sto11g2103 503 MobiDBLite consensus disorder prediction 24 43 - -
Sto11g2103 503 Pfam Transcription factor S-II (TFIIS), central domain 289 438 IPR003618 GO:0006351
Sto11g2103 503 MobiDBLite consensus disorder prediction 220 269 - -
Sto11g2103 503 Pfam ABC transporter transmembrane region 436 502 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Sto11g2103 503 SUPERFAMILY Elongation factor TFIIS domain 2 289 422 IPR036575 GO:0006351
Sto11g2103 503 MobiDBLite consensus disorder prediction 244 258 - -
Sto11g2103 503 ProSiteProfiles BAH domain profile. 70 189 IPR001025 GO:0003682
Sto11g2103 503 ProSiteProfiles TFIIS central domain profile. 293 449 IPR003618 GO:0006351
Sto11g2103 503 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 28 436 - -
Sto11g2103 503 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 28 436 - -
Sto11g2103 503 Pfam BAH domain 75 187 IPR001025 GO:0003682
Sto11g2103 503 Gene3D - 12 173 IPR043151 -
Sto11g2103 503 Gene3D ABC transporter type 1, transmembrane domain 425 503 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2103 Sto-Chr11 19945239 19959235 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2103 427 503 Calmodulin-binding Proteins AT2G36910 79.221 5.82e-32 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2103 - - gmx:100787670 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g2103 11 19945239 19959235 Sto11g2103 11 19945239 19959235 ECH