Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2098 ATGGGGAAAGGTAGACCTAGGGCTGTGGAAAAAGGTGTAGTAGGGCAGAGTCTTAGTGTTTCATCCTCCGGTTCACTGAATATACCTTCTGGGCCTGTATATTTTCCCACCGAAGATGAATTCAAGGACCCCTTGGAGTTTATTTATAAGATTAGACCTGAGGCTGAGCCATATGGGATTTGTAAGATTGTTCCACCAAAGAATTGGAAACCCCCATTTGCTTTGGATCTAGATGCTTTCACTTTTCCCACTAAAACGCAAGAAATTCACAAGTTACAGGCACGCCCTGCTGCTTGTGACTCCAAGACTTTTGAGTTGGAGTACTCTAGGTTTTTGGAGGACCACTGTGGTAAAAAGTCAAGGAAGAGAGTTGTGTTTGAGGGGGATGAACTGGACTTATGCAAATTATTTAATGCTGTTAAGCGATTTGGTGGATATGATAAGGTCGTGAAGGAAAAGAAATGGGGTGATGTTTCGCGGTTTGTAAGGCCAGGTAGAAAAATTACAGATTGTGCAAAGCATGTCTTATCACAATTGTACGGTGAGCATTTGTATGATTACGAGAATTTCTATAATCAGCTGAATCAAGAGATAGCTCGAAGCAGTAAGAAAGGCATGCATGAGGATGAAAAAAGTGACCATGTGGTCCAATCTTCAGGATCCAAGAAGATTAGAAAGAGTACTGATTCTCTGAAAGTTAAGGATGGCAAACTGCTAGAGGAAGAACATGACCAGATTTGTGAGCAATGCAGAAGTGGCTTGCATGGGGATGTAATGCTTTTGTGTGATAGGTGTGATAAGGGCTGGCATATTTATTGTCTTTCTCCACCACTGAAGCAAATTCCTCCAGGGAACTGGTATTGCTTTAATTGCTTGAATTCTGACAGGGACAGCTTTGGTTTTGTTCCTGGTAAGCAGTACACTTTGGAAGCATTTAGACGCCAGGCTGATCGGTCAAGGAGGAGATGGTTTGGACCAGGACCTGTTTCAAGAATGCAGATAGAGAAGAAATTTTGGGAGATTGTAGAGGGATCAGTTGGTGAGGTTGAGGTTATGTATGGAAGTGATTTGGATACATCTGTCTTTGGAAGTGGTTTTCCACGCATAACTGATCAGAAACCACAATCAATTGATGCGAAGTTATGGGATGAGTACTCAACAAATCCATGGAATCTTAATAACTTGCCTAAGTTGAAAGGATCAATGCTTCGAGCTGTTCATCACAATATCACTGGTGTTATGGTACCCTGGCTGTATATTGGGATGCTTTTCTCATCCTTTTGCTGGCATTTTGAGGATCATTGCTTTTACTCAATGAATTATCTACACTGGGGAGAGCCAAAATGTTGGTACAGTGTTCCAGGTAGTGAAGCCAGTGCTTTTGAGAAGGTGATGAGAAGCTGCCTTCCTGATCTTTTTGATGCACAACCAGATCTTCTTTTCCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCAGTTTACAGCATACTTCAGGAGCCTGGGAATTTTGTTATCACCTTCCCCAGATCTTACCATGGAGGTTTTAATCTTGGTTTAAATTGTGCGGAGGCAGTTAATTTTGCACCTGCTGACTGGCTACCTTATGGTGCATTTGGAGCTGATCTCTACCAGCGATATCACAAAACTGCTGTCTTGTCCCATGAAGAGCTTCTTTGTGTAGTGTCCCAGTACAGTGACATTGATAACAGAGTATCTCCTTATTTGAAGAAAGAATTGCTACGAATATTTGATAAAGAGAAATCCTGGAGAGAAAAACTATGGAGAAATGGTATTGTCAAATCATCTCGCATGCCTCCTCGGAAATGTCCTCAATATGTGGGAACTGAAGAGGATCCAGCATGCATTATTTGCCAGCAGTATCTATATCTTTCTGCCGTTGAGTGCAGTTGCAGGCCATCTTCTTATGTATGCCTGGAGCATTGGGATAACCTTTGTGAGTGCAAAACTGCAAGACTACGTCTTCTCTATCGTCATACACTTGCAGAATTGTATGACTTGGCACTTTCTATGGACAAATATACTTCTGAGGAGATAACACAATGTAGGAATATAAGAAGGCAGCCTTTATGTCCGGGTACTTTGACAAAAAAGGTAAAAGGTGGTCACATTACTTTCACGCAGCTTGCTACACAGTGGCTTCTGCGGTCCAGTAAGATTCTTCAGAATCCTTTTTCAAGTGATGCTTTTGTTTCTGCACTAAGGGAAGCTGAACAGTTTCTTTGGGCTGGTCCTGAGATGAATTCTgTTCGAGATATGGTGAAGAATTTGATTGAAGCTCAGAAGTGCGCAGAAGGGATAAGAGATTGTGTAAGAACAATTGATTCCTGGTCGTTTCATCAGGACTCTGGTGTAGAGAAAGTTCACCTAGAATCTGTTAATGAATTGCTGAAATTTAATTCTGCACCATGCAATGAGCCTGCTTATCATAAGTTGAagGAATATGCAGAAGGGGCAATGTTGTTAATTCAGGAAATTAATGATATGTTGTCTACATGTTCAACGATGTCTGAGTTGGAATCTTTGCACTCTAGAACTTGTGACTCAGCAATCTACGTGAAAGAGATTGAGAATTTGGAAAGGAAAATTTCTTCAACTAAGGCATGGCTGCATAGAGTTAGAAGGTGCATCTCAACTAAACATCCTGCAATAGAGATTGATATCCTTTATAAGTTGAAGTCAGAGATTGCGGAGCTTCAAGTGCAACTTCCAGAGATagaattgataaataatatactTTGTCAAGCTGAATCTTGTCGCACAAAATGTAGTGAGATATTAGAAGGCCCTTTGAATCTAAAGAATGTTGGTTTGCTGCTTGAGGAATGGGACAGCTTTACGATTGATGTACCCGAGTTGAAGCTTCTGAGGAAATATTATAAGGATGCTGTTTCATGGGTTTCCAACTTCAACTGTGTATTAGGCACAATGCATGAAAGAGAGGATCAACATAATGTAGTTAATGAATTGAAGGGTGTTTTAGAAGATGGtttatctttaaaaattcaAGTTGATGAGTTACCGTTAGTTGAGATTGAGCTGCAGAAGGCTTTTTGCCGGGAAAACGCTCTAAAGGCACACAATTCTAAGATGTCTCTGGAATTCATTCAGCAAGTAATGGAGGAGGCCAGAGTGCTACAAATTGAGAGGGAgaatttatttgttgttttatCTGATTTACTTGCTGTTGCCATACCTTGGGAGGAAAGGGCAAGAGAGATTCTTTCACATGAGGCTTCTATCTCAGACTTCGAAGATATGGAGAGGGCCTCAGAAAGCATATTTATGATTCTTCCTTCTCTTAACGATATCAAGGAAGCAATATTGGAAGCTAATTCCTGGTTAATGAATTCAAAACCATTTTTGGTTTCTTCTCTTCATGCATCAGATTCTCTGCTGAAAGTTGAGGACCTTCAGATGTTAGTTTCCCAGTCGAAGCTTCTTAGAGTATCTTTGAAAGAAACAAGGATGCTTGAAATTGTTCTCAAGAACTGCAACGAATGGGAGTCTGATGCAAGTTCTCTACTTCAAGATGCTCAGGGTGTTTTTGAATTGGATGACGTTGTTCATGGAATAAGCAGTGGCCTAATGTCCAAAGTTGAAGGTTTGATTGCTAGAGTGCAATCTACCACAACATCTGGTTTATCACTTGGTTTTGACTTTGACAAGATTCCAAAACTTAAAGCAACTTGTTCTACACTGCAGTGGTGCAAAAAGATCCTTTCCTTCTGCAATCTTTCTCCTTCTTTAGAGGATGTTTTGGAGGTTGCAGAAGACCTTCCTCTTTCCTATGGTTCTGGTGCTCTGTTGAATCTACTTAATGGTGGGATTAAATGGCTTAGGCAAGCCTTGGAGGTAATATCTGAACCACGCAATTCTAGAAGATGCAAGTTAAGTGATGTTGAAGATATTATTACCAATTATCagACTATTAATATGCCCTTTGCAGCAGTAATCTGTCAACTTGAAGAAGCCATTGAAAAACATAAGTTGTGGCAAGAACAGGTGCATCAATTCCTTAGTCTAAGCTCTAGGGAACGATCTTGGTTATCAATGTCAAAACTCAAGGAACTCGGAGATAACACTGCCTTCAGTTGCTCAGAACTGAGTTTGATATTATCTGAAGTTGAGAAGGTGGAGAATTGGAAGAAACACTGCACGGATCTTGTAGGAACTCTAGTCCAAAATGAAAACTCACTGCTTGATACTCTGCAGAAGATCAAACAAAGTCTAGATAGATCATTGTTCATATTTGGCAAGTTGAAAGACAAGGAGGAACAAAATCTATGTTTCTACTGCTTTACCGATTCTGGAGATCAGGAATTTCTTACTTGTTCCACTTGTAAGAACTGCTATCATATGCAGTGCATTGGACCAATGGCAGTGGACAATGGCCATGAAGATTATACGTGCTCTACTTGTAAAATTTTGAAGGGTGAATCCAATTATAAGGACAGAAGTCTCCCTCTGATATTTGGTGAGAAGCAACCTGATCTGAAAGTTCTTCGTGAACTTCTTTCTGATGCTGAAAATTTCTGTGTAAGGATTGATGAAATAGATATTCTCAATCAACTTGTTGAGCAAGCCCTTGCTTGCAAATCTTGCTTGAGAGAAATTTTGAACCTAGCATCAGTTAAAGTTGACAAAGATATCACTATCATCTCTGAAAAATTGATCATTGCTACAAAAGCCATTGAAGTGGCTGGTGTCTGTGATCAGAATGATATAAATGACCTTGAGCTAGCTTTATCAAAACACCTTTGGAAAATTCGAGTCAACAAAATGCTAAATAGTATACAAAAGCCCACTATCCAAGAGATTCAGAGCCATCTGAAAGAGGGACTGACTATGGAAATATTGCCTGAAGATCATTATATGGCGAAACTTACAAAAGTAAATTGCTTATGTTTGCAATGGGCAGAACTAGCCAAGAAGGTTGCAGTTGATTCTGGATCACTCAGCCTGGACAAAGTTTTTGAATTAATTGCAGAAGGTGAAAACTTACCTGTTGATGTGGAACAGGAACTCAAGATGTTAAGAACACGAAGTATGCTTCATTGCATTTGCCGAAAGCCCTTTGATCCGAGAAGAATGATTGCTTGTCATCAGTGTGATGAGTGGTATCACTTCGATTGCATGAAGTTACCATGCAGTCAACTTGTCTACATTTGTCCTGCATGCAACCCATGTTCAGAAGAAATGCCGACAGCATCGCTGGACCAAGATAGATTAACTAGTGCTAAATTTGAGGAACCTAAAACACCATCTCCAAGGCATACAAATCCAAGAAAGAAGCAGAAGAGAGATGTGCACAGTGTGAATCACAAGACATTAGTGACCAATGatcaaagtagtaattttaggTATTCCAGTGGGATAGAATGTCTAAGATGGCAAAATCGAAAGCCTTTCAGAAGGGCAGCTAAGAAACGCCTTGAGCTTCAAAGTCTTTCTTCATCATTTCTATGTATACACAACAATAACTAA 5523 0.3971 MGKGRPRAVEKGVVGQSLSVSSSGSLNIPSGPVYFPTEDEFKDPLEFIYKIRPEAEPYGICKIVPPKNWKPPFALDLDAFTFPTKTQEIHKLQARPAACDSKTFELEYSRFLEDHCGKKSRKRVVFEGDELDLCKLFNAVKRFGGYDKVVKEKKWGDVSRFVRPGRKITDCAKHVLSQLYGEHLYDYENFYNQLNQEIARSSKKGMHEDEKSDHVVQSSGSKKIRKSTDSLKVKDGKLLEEEHDQICEQCRSGLHGDVMLLCDRCDKGWHIYCLSPPLKQIPPGNWYCFNCLNSDRDSFGFVPGKQYTLEAFRRQADRSRRRWFGPGPVSRMQIEKKFWEIVEGSVGEVEVMYGSDLDTSVFGSGFPRITDQKPQSIDAKLWDEYSTNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSEASAFEKVMRSCLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKTAVLSHEELLCVVSQYSDIDNRVSPYLKKELLRIFDKEKSWREKLWRNGIVKSSRMPPRKCPQYVGTEEDPACIICQQYLYLSAVECSCRPSSYVCLEHWDNLCECKTARLRLLYRHTLAELYDLALSMDKYTSEEITQCRNIRRQPLCPGTLTKKVKGGHITFTQLATQWLLRSSKILQNPFSSDAFVSALREAEQFLWAGPEMNSVRDMVKNLIEAQKCAEGIRDCVRTIDSWSFHQDSGVEKVHLESVNELLKFNSAPCNEPAYHKLKEYAEGAMLLIQEINDMLSTCSTMSELESLHSRTCDSAIYVKEIENLERKISSTKAWLHRVRRCISTKHPAIEIDILYKLKSEIAELQVQLPEIELINNILCQAESCRTKCSEILEGPLNLKNVGLLLEEWDSFTIDVPELKLLRKYYKDAVSWVSNFNCVLGTMHEREDQHNVVNELKGVLEDGLSLKIQVDELPLVEIELQKAFCRENALKAHNSKMSLEFIQQVMEEARVLQIERENLFVVLSDLLAVAIPWEERAREILSHEASISDFEDMERASESIFMILPSLNDIKEAILEANSWLMNSKPFLVSSLHASDSLLKVEDLQMLVSQSKLLRVSLKETRMLEIVLKNCNEWESDASSLLQDAQGVFELDDVVHGISSGLMSKVEGLIARVQSTTTSGLSLGFDFDKIPKLKATCSTLQWCKKILSFCNLSPSLEDVLEVAEDLPLSYGSGALLNLLNGGIKWLRQALEVISEPRNSRRCKLSDVEDIITNYQTINMPFAAVICQLEEAIEKHKLWQEQVHQFLSLSSRERSWLSMSKLKELGDNTAFSCSELSLILSEVEKVENWKKHCTDLVGTLVQNENSLLDTLQKIKQSLDRSLFIFGKLKDKEEQNLCFYCFTDSGDQEFLTCSTCKNCYHMQCIGPMAVDNGHEDYTCSTCKILKGESNYKDRSLPLIFGEKQPDLKVLRELLSDAENFCVRIDEIDILNQLVEQALACKSCLREILNLASVKVDKDITIISEKLIIATKAIEVAGVCDQNDINDLELALSKHLWKIRVNKMLNSIQKPTIQEIQSHLKEGLTMEILPEDHYMAKLTKVNCLCLQWAELAKKVAVDSGSLSLDKVFELIAEGENLPVDVEQELKMLRTRSMLHCICRKPFDPRRMIACHQCDEWYHFDCMKLPCSQLVYICPACNPCSEEMPTASLDQDRLTSAKFEEPKTPSPRHTNPRKKQKRDVHSVNHKTLVTNDQSSNFRYSSGIECLRWQNRKPFRRAAKKRLELQSLSSSFLCIHNNN 1840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2098 1840 SMART JmjN_1 30 71 IPR003349 -
Sto11g2098 1840 ProSitePatterns Zinc finger PHD-type signature. 1699 1739 IPR019786 -
Sto11g2098 1840 Pfam JmjC domain, hydroxylase 417 533 IPR003347 -
Sto11g2098 1840 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1367 1492 IPR013083 -
Sto11g2098 1840 CDD PHD_RSF1 247 291 - -
Sto11g2098 1840 ProSitePatterns Zinc finger PHD-type signature. 1442 1486 IPR019786 -
Sto11g2098 1840 Pfam PHD-finger 246 293 IPR019787 -
Sto11g2098 1840 PANTHER LYSINE-SPECIFIC DEMETHYLASE 25 1055 - -
Sto11g2098 1840 ProSiteProfiles JmjN domain profile. 31 72 IPR003349 -
Sto11g2098 1840 MobiDBLite consensus disorder prediction 201 228 - -
Sto11g2098 1840 ProSitePatterns Zinc finger PHD-type signature. 247 291 IPR019786 -
Sto11g2098 1840 MobiDBLite consensus disorder prediction 1760 1789 - -
Sto11g2098 1840 ProSiteProfiles JmjC domain profile. 384 550 IPR003347 -
Sto11g2098 1840 Gene3D Cupin 14 127 - -
Sto11g2098 1840 SMART ARID_2 95 188 - -
Sto11g2098 1840 Gene3D Cupin 275 556 - -
Sto11g2098 1840 SUPERFAMILY FYVE/PHD zinc finger 234 292 IPR011011 -
Sto11g2098 1840 SUPERFAMILY Clavaminate synthase-like 331 564 - -
Sto11g2098 1840 Pfam jmjN domain 32 65 IPR003349 -
Sto11g2098 1840 Pfam PLU-1-like protein 897 1015 IPR013637 -
Sto11g2098 1840 Pfam PLU-1-like protein 993 1189 IPR013637 -
Sto11g2098 1840 Pfam PLU-1-like protein 1141 1399 IPR013637 -
Sto11g2098 1840 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 25 1055 - -
Sto11g2098 1840 ProSiteProfiles Zinc finger PHD-type profile. 244 294 IPR019787 -
Sto11g2098 1840 Pfam ARID/BRIGHT DNA binding domain 109 188 IPR001606 GO:0003677
Sto11g2098 1840 ProSiteProfiles Zinc finger PHD-type profile. 1439 1489 IPR019787 -
Sto11g2098 1840 SUPERFAMILY FYVE/PHD zinc finger 1435 1488 IPR011011 -
Sto11g2098 1840 SUPERFAMILY FYVE/PHD zinc finger 1695 1747 IPR011011 -
Sto11g2098 1840 Pfam C5HC2 zinc finger 627 678 IPR004198 -
Sto11g2098 1840 SMART bright_3 99 193 IPR001606 GO:0003677
Sto11g2098 1840 SUPERFAMILY ARID-like 81 198 IPR036431 GO:0003677
Sto11g2098 1840 CDD ARID 100 188 - -
Sto11g2098 1840 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1683 1741 IPR013083 -
Sto11g2098 1840 SMART PHD_3 1441 1487 IPR001965 -
Sto11g2098 1840 SMART PHD_3 1698 1740 IPR001965 -
Sto11g2098 1840 SMART PHD_3 246 292 IPR001965 -
Sto11g2098 1840 ProSiteProfiles ARID domain profile. 98 192 IPR001606 GO:0003677
Sto11g2098 1840 SMART cupin_9 384 550 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2098 Sto-Chr11 19867226 19889772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2098 27 95 JUMONJI Transcription Factor Family AT1G08620 49.315 7.91e-09 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Sto11g2098 PLU-1 2.3e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2098 K11446 - gmx:100789512 2739.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g2098 11 19867226 19889772 Sto11g2098 11 19867226 19889772 ECH