Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2079 ATGAGACAAGCAGGAGCATATTCAGGAATACACTGTGGGGGTATTTCTGGAAAAATGGGTCCTCACCCTCTGCCATTGGCGAGGATAAAGAAGATAATGAAGAGGTCAGGTTCGGGAGATGAAGTGAAGATGATCTCAGCAGAGGCTCCCATTGCTTTTGCCAAAGCTTGTGAGTTCTTCATTGAGGAAATTACTAAAAGGTCCTGGGTGATGGCCACCCAATCCAAAAGGAGAACTCTCCTTAAAGACGACGTCGCTTCAGCCCTCATAGCCACCGATGTCTTTGACTTCTTGATCACTTTGGTTTCTCATTCTGCCTCCCCCGctattactactactactaatCTTATGTCCATGGACTCTTAA 366 0.4426 MRQAGAYSGIHCGGISGKMGPHPLPLARIKKIMKRSGSGDEVKMISAEAPIAFAKACEFFIEEITKRSWVMATQSKRRTLLKDDVASALIATDVFDFLITLVSHSASPAITTTTNLMSMDS 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2079 121 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 112 - -
Sto11g2079 121 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 89 IPR003958 -
Sto11g2079 121 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 112 - -
Sto11g2079 121 SUPERFAMILY Histone-fold 17 98 IPR009072 GO:0046982
Sto11g2079 121 Gene3D Histone, subunit A 14 104 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2079 Sto-Chr11 19638807 19639172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2079 22 102 CCAAT-HAP5 Transcription Factor Family AT3G48590 62.963 1.03e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Sto11g2079 CBFD_NFYB_HMF 7.2e-17 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2079 - - gmx:100777614 170.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g2079 11 19638807 19639172 Sto11g2079 11 19638807 19639172 ECH