Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2078 atgtCGTTCAGCGGAACCCAACAGAAATGCAAGGCTTGCGATAAAACCGTTCATTTCATCGACGCCTTATCGGCGGATGGCGTCGTTTATCACAAAACCTGCTTCAAGTGCAGCCACTGCAATGGCCTCCTTGTGATAAGCAACTATTCGTCGTTGGATGGAGTGTTATACTGCAAGCCTCATTTTGAGCAGTTTTTCAAAAGCACCGGTGGTGTCGCCAGGAAAGCCCTCACAAATGGTTTTGAAATGTGTGTGCAGACAAGGGCACCAAGCAAACTGTCGGCTATGTTCTCTGGGACTCAAGACAAATGCTCATCCTGCAAGAAAACTGTATACCCACTCGAGAAGGTGACTGTGGAAGGAGAATTCTATCACAAATCATGCTTTAGATGTGCCCACGGAGGGTGCTTCATCTCGCCTTCGAACTACGCTGCTCTTGATGGTTTTCTTTACTGCAAGCCCCACTTTGCTCAGTTGTTCAAGGAGAAAGGCAGCTATACCCACGTCGTCAAGTCTGCTTCTATGAAGAAGAACGAGCTCCAGCAAGCTGCTGAGAAGGCTCTCGAATCTTCTTCTGAACTCCATTCTGCGTCCGATCCTGAGACCATCACAGCCACAAAGCAAGATGCTGATGAATAA 639 0.4773 MSFSGTQQKCKACDKTVHFIDALSADGVVYHKTCFKCSHCNGLLVISNYSSLDGVLYCKPHFEQFFKSTGGVARKALTNGFEMCVQTRAPSKLSAMFSGTQDKCSSCKKTVYPLEKVTVEGEFYHKSCFRCAHGGCFISPSNYAALDGFLYCKPHFAQLFKEKGSYTHVVKSASMKKNELQQAAEKALESSSELHSASDPETITATKQDADE 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2078 212 MobiDBLite consensus disorder prediction 181 212 - -
Sto11g2078 212 Coils Coil 170 190 - -
Sto11g2078 212 PANTHER OS06G0237300 PROTEIN 1 204 IPR045268 GO:0051015
Sto11g2078 212 MobiDBLite consensus disorder prediction 181 204 - -
Sto11g2078 212 CDD LIM2_SF3 104 164 - -
Sto11g2078 212 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 204 - -
Sto11g2078 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 96 129 - -
Sto11g2078 212 Pfam LIM domain 104 159 IPR001781 -
Sto11g2078 212 Pfam LIM domain 10 64 IPR001781 -
Sto11g2078 212 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Sto11g2078 212 ProSiteProfiles LIM domain profile. 102 162 IPR001781 -
Sto11g2078 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 169 - -
Sto11g2078 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Sto11g2078 212 Gene3D Cysteine Rich Protein 98 168 - -
Sto11g2078 212 Gene3D Cysteine Rich Protein 4 72 - -
Sto11g2078 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 72 - -
Sto11g2078 212 SMART lim_4 103 155 IPR001781 -
Sto11g2078 212 SMART lim_4 9 61 IPR001781 -
Sto11g2078 212 CDD LIM1_SF3 6 68 - -
Sto11g2078 212 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2078 Sto-Chr11 19627168 19634293 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Sto11g2078 LIM 5.3e-11 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2078 - K09377 mnt:21407059 308.145