Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2054 aTGGCTTCCTCCATCTTTCACTTTGCTACATTCTTGTTGCTTTCATGGATGCTCACAAAACCAACATCAGCTCTAGGAATTTTCCGTCCAAGCCCATGGGCTCTTGCTCACGCCACTTTTTATGGCGACGAAACTGCTTCTGCCACCATGGGCGGAGCATGTGGTTACGGCAACTTATTCACAAACGGATACGGCACGGACACGGCGGCTCTAAGCTCCACCCTCTTCAACGACGGCTTCGCCTGCGGCACGTGCTTCCAGATCAAGTGCTACCAATCCAGCGCGTGCCACTCCACCGTCCCCTTCACCACCGTCACCGCCACCAACCTCTGCCCGCCGAACTGGGCCGAGCCCTCGGACAACGGCGGGTGGTGCAACCCGCCACGCGCGCACTTCGACATGTCGAAGCCGGCCTTCATGCGGATCGCGGAGTGGAAGGCCGGGAACGGGTACTGGCTGCTGGTGTACGTGATGAACGTGGGCGGAGGGGGGGATATAGGGAGCATGTGGGTGAAGGGGAGCCGGACGGGTTGGATCCGGATGAGCCATAATTGGGGCGCGTCGTATCAGGCGTTCGCGAGTCTGGGAGGGCAGGGGTTGTCGTTTAGGGTGGTGTCGTTTACGACGGGGCAGAGTGTCGTTGCGTGGAATGCGGCTCCGCAGAGTTGGAGCGTGGGGGTCACGTATTCCACTAACGTTAACTTCCGCTAG 711 0.5949 MASSIFHFATFLLLSWMLTKPTSALGIFRPSPWALAHATFYGDETASATMGGACGYGNLFTNGYGTDTAALSSTLFNDGFACGTCFQIKCYQSSACHSTVPFTTVTATNLCPPNWAEPSDNGGWCNPPRAHFDMSKPAFMRIAEWKAGNGYWLLVYVMNVGGGGDIGSMWVKGSRTGWIRMSHNWGASYQAFASLGGQGLSFRVVSFTTGQSVVAWNAAPQSWSVGVTYSTNVNFR 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2054 236 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 148 IPR007112 -
Sto11g2054 236 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Sto11g2054 236 PRINTS Expansin signature 103 113 IPR002963 GO:0009664
Sto11g2054 236 PRINTS Expansin signature 122 139 IPR002963 GO:0009664
Sto11g2054 236 PRINTS Expansin signature 139 152 IPR002963 GO:0009664
Sto11g2054 236 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Sto11g2054 236 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Sto11g2054 236 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Sto11g2054 236 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Sto11g2054 236 Gene3D - 20 152 IPR036908 -
Sto11g2054 236 PANTHER EXPANSIN 148 235 - -
Sto11g2054 236 PANTHER EXPANSIN 8 148 - -
Sto11g2054 236 SUPERFAMILY Barwin-like endoglucanases 32 159 IPR036908 -
Sto11g2054 236 Pfam Expansin C-terminal domain 148 220 IPR007117 -
Sto11g2054 236 Pfam Lytic transglycolase 68 149 IPR009009 -
Sto11g2054 236 SMART dpbb_1 68 151 IPR007112 -
Sto11g2054 236 SUPERFAMILY PHL pollen allergen 147 230 IPR036749 -
Sto11g2054 236 PANTHER EXPANSIN-A15 148 235 IPR002963 GO:0009664
Sto11g2054 236 PANTHER EXPANSIN-A15 8 148 IPR002963 GO:0009664
Sto11g2054 236 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 151 231 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2054 Sto-Chr11 19378351 19379859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2054 26 236 Expansin Gene Family AT1G12560 62.821 2.01e-103 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2054 - - lang:109349912 392.889