Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2052 ATGGCAGCACTGAGTCGTTGTGCCTCCAACGGGGACCGGATCGGATTACCGATCGAATGGGTCCTCGATTATGGATTCACGTGGTTTGGGAGCATTTATTCACACTTTCACAGGTTTTTTTTGGCGGAGATTTTGGGGGCGAAGATGGTGAGGGGAAAAACGCAGATGAAACGCATCGAGAATGATACGAGCAGGCAAGTAACGTTCTCGAAGCGAAGGAATGGGCTTCTGAAGAAGGCGTTCGAGCTCTCCGTGCTCTGCGATGCGGAAGTTGcactcatcatcttctctccgaGAGGCAAGCTCTATGAGTTCTCCAGTTCTAGTATAAACAAAACAGTTGAACGGTATCAAAAGAAGGTCAAGGACTTGAGTCTCTGCTCCAAAGGAATCGAAGACAAAACACAGCATGTTGTGAAGGAAGGAACCATCAGCATGGCGAAGAAGATTGAGCATCTTGAAGTTTCTAAAAGAAAACTTTTGGGAGATGGTTTGGATATATGTTCTGTTGAGGAGTTAAATCAAATAGAGAATCAGTTAGAACGAAGCTTAATCAAAATTAGGGCTAGAAAGACTCAATTGTTCAAGGAGCAGATTGAGAAACTAAGGGACGAGTGTGGGATTGAAGAAAGGGGTTCACCGAGGAAAGAGGATGTGGGAGCGGTGGAAGAGGTGGAGACGGAGTTGTTTATAGCCATAAGGCCACCTCTGAGACGAATCctttaa 726 0.4421 MAALSRCASNGDRIGLPIEWVLDYGFTWFGSIYSHFHRFFLAEILGAKMVRGKTQMKRIENDTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSINKTVERYQKKVKDLSLCSKGIEDKTQHVVKEGTISMAKKIEHLEVSKRKLLGDGLDICSVEELNQIENQLERSLIKIRARKTQLFKEQIEKLRDECGIEERGSPRKEDVGAVEEVETELFIAIRPPLRRIL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2052 241 ProSiteProfiles K-box domain profile. 136 228 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto11g2052 241 PANTHER MADS-BOX PROTEIN SOC1 49 205 - -
Sto11g2052 241 ProSiteProfiles MADS-box domain profile. 49 109 IPR002100 GO:0003677|GO:0046983
Sto11g2052 241 Coils Coil 170 190 - -
Sto11g2052 241 PRINTS MADS domain signature 51 71 IPR002100 GO:0003677|GO:0046983
Sto11g2052 241 PRINTS MADS domain signature 71 86 IPR002100 GO:0003677|GO:0046983
Sto11g2052 241 PRINTS MADS domain signature 86 107 IPR002100 GO:0003677|GO:0046983
Sto11g2052 241 PANTHER MADS BOX PROTEIN 49 205 - -
Sto11g2052 241 SMART madsneu2 49 108 IPR002100 GO:0003677|GO:0046983
Sto11g2052 241 CDD MADS_MEF2_like 51 119 IPR033896 GO:0000977|GO:0045944
Sto11g2052 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 58 105 IPR002100 GO:0003677|GO:0046983
Sto11g2052 241 ProSitePatterns MADS-box domain signature. 51 105 IPR002100 GO:0003677|GO:0046983
Sto11g2052 241 Pfam K-box region 134 205 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto11g2052 241 Gene3D - 61 129 IPR036879 GO:0003677|GO:0046983
Sto11g2052 241 SUPERFAMILY SRF-like 51 120 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2052 Sto-Chr11 19350865 19361500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2052 49 205 MADS-box Gene Family AT4G22950 68.153 9.88e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto11g2052 K-box 2.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2052 - - gmx:100782713 246.899