Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2049 ATGtcagatgatgaagatgatttgGCGATGGATTTCTCAATGGATCAATCTGGGGTTGAAGGTCATGACATGATGGGTTTTGGTCCATTACTTCCTACAGAATCTGAAAGGTCATTGATGGAACGAGTTCGTCAAGAACTGAAGATTGAGCTGAAGCagGGTTTCAAGTCAAGAATCGAAGATGTGAGGGAGGAGATTCTAAGGAAACGAAGAGCTGGGAAATTACCAGGTGACACAACTTCGGTGCTAAAGAACTGGTGGCAACAACATGCCAAGTGGCCCTATCCAACTGAAGATGACAAGGCAAAACTTGTGGAGGAGACGGGGTTGCAGCTGAAGCAAATTAATAATTGGTTCATCAACCAAAGGAAACGTAACTGGCACAGCACCTCTCAGTCCGTCACCTCTTTGAAGTCCAAGCGCAAGAGagtTAGTCCCACTAAGGATTCCAGCCAGATCGATgcagaagatatatatatatatatatatatatatatatatatatatagatgctgtaagatagctcaagaaattaagGTCGTCTGA 546 0.3773 MSDDEDDLAMDFSMDQSGVEGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKNWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSTSQSVTSLKSKRKRVSPTKDSSQIDAEDIYIYIYIYIYIYRCCKIAQEIKVV 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2049 181 Pfam Homeobox KN domain 86 125 IPR008422 GO:0003677|GO:0006355
Sto11g2049 181 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 3 143 - -
Sto11g2049 181 ProSiteProfiles 'Homeobox' domain profile. 66 129 IPR001356 GO:0003677
Sto11g2049 181 CDD homeodomain 69 129 IPR001356 GO:0003677
Sto11g2049 181 ProSiteProfiles ELK domain profile. 46 66 IPR005539 GO:0003677
Sto11g2049 181 Gene3D - 65 143 - -
Sto11g2049 181 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 143 - -
Sto11g2049 181 SUPERFAMILY Homeodomain-like 68 132 IPR009057 -
Sto11g2049 181 SMART HOX_1 68 133 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2049 Sto-Chr11 19322597 19323732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2049 1 143 Homeobox Transcription Factor Family AT1G62990 87.671 3.75e-93 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto11g2049 Homeobox_KN 7.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2049 - - pop:7490922 283.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g2049 11 19322597 19323732 Sto11g2049 11 19322597 19323732 ECH