Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2026 ATGGACAACCACACTACAATCTTCACACAAGAACCATCTTCGTCCTCGTCGTCGTCCTTGTCGTCGAGCTCGAGTAATCGATCGTCGTCGTCGATAGTGCTGGCGTCGGCGCGTCCCAAGAAGCGAGCGGGGCGGCGCGTGTTCAAGGAGACGAGGCATCCCGTGTTCCGGGGCGTGAGGCGCAGGAACAACGACAAGTGGGTGTGCGAGGTCCGCGTGCCTAATGATAAGAAATCGAGGATCTGGCTCGGCACGTACGCCACGCCGGAGATGGCCGCGCGGGCGCATGACGTGGCGGCTCTCGCGCTGCGCGGCGAGTCGGCTTGCCTCAACTTTGCGGACTCGGCTTGTCGCTTGTCGCCGATGATTCCCGCCTCCGCCAGCGCCGTTGAGATCAGGAGGGTCGCGTCCCTGGCTGCCCACGCGTTTCACGACCCCAAGAACGACGTCGTCTCTAGTACTAATACTACCGCTTCGGACGATTCTGAGGTCTGCAGCGGAACGACGTCGTTGTGTGTTGTGCGAGATCATGACTATGAGCTGAATGATTTGCTTTTGGGTATGGCGGATGAGCCTCTTCGATCTCCGACTCATCGTTTTCTGCAATATGGGCAGAAGtga 621 0.591 MDNHTTIFTQEPSSSSSSSLSSSSSNRSSSSIVLASARPKKRAGRRVFKETRHPVFRGVRRRNNDKWVCEVRVPNDKKSRIWLGTYATPEMAARAHDVAALALRGESACLNFADSACRLSPMIPASASAVEIRRVASLAAHAFHDPKNDVVSSTNTTASDDSEVCSGTTSLCVVRDHDYELNDLLLGMADEPLRSPTHRFLQYGQK 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2026 206 Gene3D AP2/ERF domain 55 114 IPR036955 GO:0003700|GO:0006355
Sto11g2026 206 ProSiteProfiles AP2/ERF domain profile. 55 113 IPR001471 GO:0003700|GO:0006355
Sto11g2026 206 MobiDBLite consensus disorder prediction 1 35 - -
Sto11g2026 206 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D-LIKE 7 197 - -
Sto11g2026 206 SUPERFAMILY DNA-binding domain 55 115 IPR016177 GO:0003677
Sto11g2026 206 CDD AP2 56 115 IPR001471 GO:0003700|GO:0006355
Sto11g2026 206 Pfam AP2 domain 54 105 IPR001471 GO:0003700|GO:0006355
Sto11g2026 206 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Sto11g2026 206 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Sto11g2026 206 SMART rav1_2 55 119 IPR001471 GO:0003700|GO:0006355
Sto11g2026 206 MobiDBLite consensus disorder prediction 1 45 - -
Sto11g2026 206 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 7 197 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2026 Sto-Chr11 19113375 19114679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2026 28 202 AP2-EREBP Transcription Factor Family AT1G12610 50.000 1.99e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto11g2026 AP2 4.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2026 - - lja:Lj4g3v1333590.1 190.274