Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto11g2014 | ATGGCTTCATCTTCCTCAAACTCCTACGACGTGCCTTGGGTAGAGAAGTATCGTCCCACCAAGGTCGTCGACATCGTCGGCAACGAGGATGCCGTCTCTAGGCTTCAAGTTATCGCTCGCGACGGCAATATGCCCAATTTAATATTAGCTGGTCCTCCTGGAACTGGGAAAACCACTAGTGTACTGGCACTTGCACATGAACTTCTGGGACAAAATTTCAAGGAAGCTGTTCTCGAGCTAAATGCATCAGATGATAGAGGAATAGATGTTGTGAGGAACAAGATCAAGATGTTTGCACAAAAGAAAGCGACACTGCCTCCTGGGCGACACAAAATAGTAATACTGGATGAAGCTGACAGCATGACATCCGGAGCTCAGCAAGCTTTGAGAAGGACAATGGAAATATATTCAAATTCCACTCGTTTTGCTCTTGCATGCAATACATCGTCTAAAATTATTGAACCAATTCAGAGTAGATGTGCCATTGTGCGATTTTCTCGATTATCTGATCAAGAAATACTTGGTCGCCTCATGGTTGTGGTTGAAGCTGAAAAGGTTCCCTATGTTCCAGAAGGCATTGAAGCCATCATTTTCACTGCTGATGGTGATATGAGGCAGGCATTGAATAACTTGCAGGCAACATATAGTGGATTCCGATTTGTTAATCAAGAAAATGTTTTTAAGGTTTGCGACCAGCCGCATCCGTTGCATGTGAAAAATATGGTGCGTAATGTGATTGAAGGAAAATTTGACGAGGCTTGTGTGGGCCTGAAGCAACTGTATGATTTGGGGTACTCGCCCACAGATATAATCACCACACTTTTTCGTATAATAAAGAATTATGATATGGCCGAGTACCTGAAATTGGAATTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGTTCTTATCTTCAGCTTTGTGGGCTTTTGGCTAAGCTTTCTCTGGTTCGTGAAACAGCTAAAGCTGCTTAA | 990 | 0.4293 | MASSSSNSYDVPWVEKYRPTKVVDIVGNEDAVSRLQVIARDGNMPNLILAGPPGTGKTTSVLALAHELLGQNFKEAVLELNASDDRGIDVVRNKIKMFAQKKATLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVEAEKVPYVPEGIEAIIFTADGDMRQALNNLQATYSGFRFVNQENVFKVCDQPHPLHVKNMVRNVIEGKFDEACVGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSLVRETAKAA | 329 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto11g2014 | 329 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 9 | 231 | IPR027417 | - | |
| Sto11g2014 | 329 | Pfam | Replication factor C C-terminal domain | 233 | 318 | IPR013748 | - | |
| Sto11g2014 | 329 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 232 | 323 | IPR008921 | GO:0003677|GO:0006260 | |
| Sto11g2014 | 329 | CDD | HLD_clamp_RFC | 168 | 230 | - | - | |
| Sto11g2014 | 329 | SMART | AAA_5 | 43 | 169 | IPR003593 | - | |
| Sto11g2014 | 329 | CDD | AAA | 26 | 163 | - | - | |
| Sto11g2014 | 329 | Gene3D | - | 4 | 168 | IPR027417 | - | |
| Sto11g2014 | 329 | Gene3D | - | 169 | 232 | - | - | |
| Sto11g2014 | 329 | Gene3D | - | 233 | 325 | - | - | |
| Sto11g2014 | 329 | Pfam | ATPase family associated with various cellular activities (AAA) | 47 | 165 | IPR003959 | GO:0005524|GO:0016887 | |
| Sto11g2014 | 329 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 5 | 327 | - | - | |
| Sto11g2014 | 329 | PANTHER | REPLICATION FACTOR C SUBUNIT 2 | 5 | 327 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto11g2014 | Sto-Chr11 | 18933875 | 18936949 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sto11g2014 | 7 | 328 | Core DNA Replication Machinery Family | AT1G63160 | 91.925 | 0.0 | 627 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto11g2014 | K10755 | - | qsu:111999495 | 621.698 |