Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2010 ATGGCGACGACTAGGTCACTGAACCATTCATCTGAGGACATCGTCGATTCGACGCCGTTTCTAGGGAATTCAGGCGGCTCTTCCGATGAATTTAATTCCGGCCGTCGATTTGTGCGGAGGCAGAGCCTGCGTCAAGCTGCGCGGTTCCTCAGGCAGGCTAGTAGCCGTAGGATGATGCGCGAGCCGTCGATGATGGTCAGAGAGAGTGCGGCGGAGCAGTTGGAAGAGAGGCAGAGCGATTGGGCTTATTCCAAGCCCGTGGTGATTCTGGATTTGATTTGGAACTTTGCTTTTGTTGTCGTGGCAGCTACAGTGTTGATTTTGAGCAGAAATGAATCGCCTAGCATGCCTTTGAGGTTGTGGATTGTAGGTTATGCTCTGCAATGCGTCCTTCACATTTTCTGTGTTTGCGCTGAGTATAAGAGGCGGAGGCGATTCTTCCAACGCAGCCAGTCTTCGCCGCCATCCTCGAACACTGAAAGGTTTGACAGTAGTGACAATTTGAGTTCCGGTTCAAGGGAGGGTTCTAGGCACTTTGGGACATTGCCGCAACTCGATGAGGAGGGTACAAGTGTTGCAAAACACCTGGAATCAGCCAATACTATGTTTTCATTTATTTGGTGGATCATTGGATTTTACTGGGTTTCTGCTGGTAGTCAATCTTTAGCCAATGATTCTCCTCAGCTATACTGGCTATGTATAATTTTTCTGGCTTTTGATGTTTTCTTTGTCGTTTTCTGTGTTGCGCTGGCATGCATAATTGGCATTGCTGTTTGCTGTTGTCTTCCATGTATCATTGCTCTTCTTTATGCAGTTGCTGACCAGGAAGGGGCATCAAAACAAGACATTGAGCAATTGTCAAAATTCAAGTTCCGAAGAATAGACAATGAGAAAGTTGTTGGTAGTACAGAAGGACCTGTTGGAGGAGTAATGACTGAATGCGGCTCGGATTTGCCCAGTGAACGCATTCTTTCTATGGAAGATGCGGAATGTTGCATCTGCCTTTCTGCTTATGAAGATGGGGTTGAACTAAGACAACTTCCTTGTGGTCACCATTTTCACTGTGCTTGTGTGGATAAGTGGCTGTACATTAACGCTACTTGTCCCCTCTGCAAGTATAATATTCTGAAGAGTAGCAGCCATGGTCAAGAGGAAGTGTAG 1161 0.4677 MATTRSLNHSSEDIVDSTPFLGNSGGSSDEFNSGRRFVRRQSLRQAARFLRQASSRRMMREPSMMVRESAAEQLEERQSDWAYSKPVVILDLIWNFAFVVVAATVLILSRNESPSMPLRLWIVGYALQCVLHIFCVCAEYKRRRRFFQRSQSSPPSSNTERFDSSDNLSSGSREGSRHFGTLPQLDEEGTSVAKHLESANTMFSFIWWIIGFYWVSAGSQSLANDSPQLYWLCIIFLAFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGASKQDIEQLSKFKFRRIDNEKVVGSTEGPVGGVMTECGSDLPSERILSMEDAECCICLSAYEDGVELRQLPCGHHFHCACVDKWLYINATCPLCKYNILKSSSHGQEEV 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2010 386 MobiDBLite consensus disorder prediction 150 183 - -
Sto11g2010 386 MobiDBLite consensus disorder prediction 150 177 - -
Sto11g2010 386 Pfam Ring finger domain 330 372 IPR001841 -
Sto11g2010 386 SUPERFAMILY RING/U-box 322 378 - -
Sto11g2010 386 SMART ring_2 331 371 IPR001841 -
Sto11g2010 386 ProSiteProfiles Zinc finger RING-type profile. 331 372 IPR001841 -
Sto11g2010 386 PANTHER TARGET OF ERK KINASE MPK-1 6 386 - -
Sto11g2010 386 CDD RING-H2_RNF111_like 330 374 - -
Sto11g2010 386 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 386 - -
Sto11g2010 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 379 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2010 Sto-Chr11 18907403 18912967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2010 24 381 C3H Transcription Factor Family AT1G68070 47.368 4.14e-114 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2010 - - gmx:100790497 580.096