Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2006 ATGAGTTCTAGATCTGGAAGCCAAgtccattatcatcatcatcatcatgcgGCGCCACTCGAGAGTACTTCTGGTGGTGAATTGGCACAAGCAGACTCGCAATCGCAGAGATCTATTCCGACGCCGTTTCTGACGAAAACCTACCAGCTCGTGGATGATCCTTCCGTGGATGACCTAATTTCCTGGAACGAAGACGGGACGAGTTTCGTAGTCTGGAAGGCGGCCGAGTTCGCTCGCGATTTGCTCCCCAAGTACTTCAAACACAACAACTTCTCTAGCTTCGGATTTCGCAAGGTTGTTCCGGATCGGTGGGAATTCGCTAATGATAGCTTCCGGCGAGGTGAGAAAGGTCTTCTCCGCGACATTCAACGGCGGAAGATCACATTACCGTCGTCGACGGCGGCGAATGCAGTGGCAGTGGCTGCGGTGGGCAGAGCGGTGTCTCCGTCGTCAAATTCCGGCGACGAACAGGTAATCTCGTCAAACTCATCTCCGATTTCTGGAAACAACAACACGGCGGTGCTCCTCCGCACAGCCAGTTGCAGCACCGCCGCGCCGGAACTGTTAGAAGAGAACGAGAGGCTGAGGAAGGAGAACATGCAACTGAGTCAGGAAGTGAGTCAGCTTAAGAGTCTGTGTAATAACATTCTGGCTCTAATGACCAATTATGCTTCTAGCCAATTAGAAGGCGTAGGCTCTTCCTCTAGTAGTGTACCCGAAGGGAAGCCATTGATGGAGCTCCTACCTGTGAAGCAAGGTGTGTGTGAGGAAGTAGTGCATGTGCCTAAGTTGTTTGGGGTTTCCATTGGGATTAAACGATGTAGGAGGGAAGCATTAGACGGAATTGGGAAAGATGAAGCGAATCATCAAACGCAGTCCAGCTCGCCGGAATTACCTGAGGGTGATGGTGGTGGGTCGGATATGAAATCAGAACCGATGGATGGGAATCAATCGGATGGTCAGGAGCCTCCGTGGTTGGACCTTGGGAAATGA 993 0.5045 MSSRSGSQVHYHHHHHAAPLESTSGGELAQADSQSQRSIPTPFLTKTYQLVDDPSVDDLISWNEDGTSFVVWKAAEFARDLLPKYFKHNNFSSFGFRKVVPDRWEFANDSFRRGEKGLLRDIQRRKITLPSSTAANAVAVAAVGRAVSPSSNSGDEQVISSNSSPISGNNNTAVLLRTASCSTAAPELLEENERLRKENMQLSQEVSQLKSLCNNILALMTNYASSQLEGVGSSSSSVPEGKPLMELLPVKQGVCEEVVHVPKLFGVSIGIKRCRREALDGIGKDEANHQTQSSSPELPEGDGGGSDMKSEPMDGNQSDGQEPPWLDLGK 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2006 330 Coils Coil 185 212 - -
Sto11g2006 330 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 27 304 IPR027725 -
Sto11g2006 330 MobiDBLite consensus disorder prediction 283 330 - -
Sto11g2006 330 Gene3D - 35 126 IPR036388 -
Sto11g2006 330 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto11g2006 330 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto11g2006 330 Pfam HSF-type DNA-binding 43 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto11g2006 330 SUPERFAMILY "Winged helix" DNA-binding domain 40 125 IPR036390 -
Sto11g2006 330 MobiDBLite consensus disorder prediction 1 38 - -
Sto11g2006 330 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 27 304 - -
Sto11g2006 330 SMART hsfneu3 39 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2006 Sto-Chr11 18863152 18864269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2006 35 330 HSF AT4G11660 49.852 2.99e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto11g2006 HSF_DNA-bind 5.5e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2006 K09419 - gmx:100791020 343.969