Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g2004 ATGGTGGAGGTTAAAATGGAGCTGGAGGAGTTCCCTTTTGATTCACCTAAACAAGATGAACTTCGCTTGTGTTTTTCTCCCCCTCTTCCAGGGAGAGCAACAGGTCGACGCTTAAGTAAGGGATGCTGGAAAGAGGAAGAGGACAACCTTTTGATTGAGGCAGTCAAGAAGCACAACGGAAGGAACTGGAAGAAAATAGCTGCGTATGTCCCTGGCAGAACTGATGGTCAATGCTTGCATCGCTGGCAAAAGGTTTTAAATCCTGATCTTGTAAAGGGATCCTGGACAAAGGAGGAGGATGATTGTCTCATTGAGCTAGTTAGAAAGTACGGTTGTAAGACATGGTCTGTTATTGCGAAATCCTTACCAGGTCGTATTGGGAAGCAATGCCGAGAAAGATGGCACAATCACCTTGACCCAGCCATAAAGAAAGATGCATGGACCAAAGAGGAGGAATCATTAATTTCTAACTATCACCAAATACACGGTAGTAAGTGGGCAGAAATTGCAAGGTTTCTTCCTGGAAgGACTGACAATGCTATTAAAAATCATTGGAACTGCTCAATGAAGAAGAAGTTGGATGCATCCTCACCTTATGGAGGTGACATAAATGCTGCTTCCTGTGGTCTCTACTCTCCTCAAATCAAGCCAGCTATGCGTACGTTGTTTGAAGCAGAGGATCAGAGCCTCAACCAAATAGTTTCTCCCAAGAAGAGTGACAGTTTGAAGCGCAATGCCGATACCTCTTTGGCAGAATTGATTATTCAAAGTGCTTCTGGAGAGAAATTGTGCTCAGAAAAAAGTAGTTATGATGAGAGGAGAACCCTTGAGATCTCAACACAAGGTGAGAACAGGTTGTTCTACTCGCCAAATGGGATCACATGTTGCAAAGACACTGCTTCTACTTTTAATCTTTCTCTGGACAGGCTTACTGCTGAATTAGATTTTGTACCTACTTATGAGCTGTTTAAATCGCCCAAACAGCTTAAGACTTCAGATGCAATGTTTATCATGGCTGGAAAATCTTGCAATCCTCTCTTTAGCTACCCAAGATTGGGCAATCTGGAGGAGAAAGATCAAGTTGGAAGCAAAAACAGAATCAACAGGATGCCACATAATGCAAATGAAAACAGCCATATTTTGATTTCCCCCAAAGAGTCTGCTGAATTTCCAAGTAATGAAAACCACATCAATGGTTGTTATCATACTCCAAATTCTACACTCAGAAATCTCATAGGCGGCAATAAGAGCCCAGAATCTGTCCTGAGAAGCTTAGCAATGACCTATGAGAACATTCCTTCCATCATTAGGAGGAGATCTTCCAGGAAAACTAGTGGTTCGGATAATGACACAACCCATACACCATTGCAGATGATCTTCTCTTCTCCTGAAAATGAACGACTTAACAACAGCTTAGAGTCGTTTATTCATAAACCAAAAAGTTCTGCAATATCTAAATCTCTGCAAGGGTGTTTTCTTTCGAAAGAAGCATACCAGTGCATACAATTCAGCTATATCCATCCGGAGAAGCATTTTATTAACTACTTGAGTCCTGATGTTCGGATAGTAAAGGAACTTCCTAAGGAATTGCAGCCTTTGGACTTAGAGGCAATTGATAGTGTTGTTTCATATGACATGGGGAAAGAGGCCAAGCTGAGTTTTTACATGAAAAACATTCTACATGTTCTACTTAATATATGTATTCATTATCTCCTTGCACCCTCCTCCCTCTATTGTGCCATTTTTCTTCTTAGTTATCGTGCGGCCTTTATTCCATCATATGGTCAAATAGAAATTCCTGCATATGATTTGCCTTCCAAGATCCTTTGCAGACTTTTGAGTGTTCATTTAAAGGGAATTCAAGGTGGGTTCATGCCAAGCAATGGTCAGGTAAAAATGAATTCGAGTCATCCCCCACTAAGCACTTCAGATGTTGAGATATTGGATGCAAGGAAAATTGACTACAACACATAA 1974 0.4108 MVEVKMELEEFPFDSPKQDELRLCFSPPLPGRATGRRLSKGCWKEEEDNLLIEAVKKHNGRNWKKIAAYVPGRTDGQCLHRWQKVLNPDLVKGSWTKEEDDCLIELVRKYGCKTWSVIAKSLPGRIGKQCRERWHNHLDPAIKKDAWTKEEESLISNYHQIHGSKWAEIARFLPGRTDNAIKNHWNCSMKKKLDASSPYGGDINAASCGLYSPQIKPAMRTLFEAEDQSLNQIVSPKKSDSLKRNADTSLAELIIQSASGEKLCSEKSSYDERRTLEISTQGENRLFYSPNGITCCKDTASTFNLSLDRLTAELDFVPTYELFKSPKQLKTSDAMFIMAGKSCNPLFSYPRLGNLEEKDQVGSKNRINRMPHNANENSHILISPKESAEFPSNENHINGCYHTPNSTLRNLIGGNKSPESVLRSLAMTYENIPSIIRRRSSRKTSGSDNDTTHTPLQMIFSSPENERLNNSLESFIHKPKSSAISKSLQGCFLSKEAYQCIQFSYIHPEKHFINYLSPDVRIVKELPKELQPLDLEAIDSVVSYDMGKEAKLSFYMKNILHVLLNICIHYLLAPSSLYCAIFLLSYRAAFIPSYGQIEIPAYDLPSKILCRLLSVHLKGIQGGFMPSNGQVKMNSSHPPLSTSDVEILDARKIDYNT 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g2004 657 SUPERFAMILY Homeodomain-like 35 93 IPR009057 -
Sto11g2004 657 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 86 IPR017930 -
Sto11g2004 657 CDD SANT 94 138 IPR001005 -
Sto11g2004 657 Pfam Myb-like DNA-binding domain 144 186 IPR001005 -
Sto11g2004 657 Pfam Myb-like DNA-binding domain 40 86 IPR001005 -
Sto11g2004 657 Pfam Myb-like DNA-binding domain 92 138 IPR001005 -
Sto11g2004 657 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 142 IPR017930 -
Sto11g2004 657 ProSiteProfiles Myb-like domain profile. 35 86 IPR001005 -
Sto11g2004 657 PANTHER MYB PROTEIN-RELATED 30 248 - -
Sto11g2004 657 CDD SANT 146 186 IPR001005 -
Sto11g2004 657 Gene3D - 92 143 - -
Sto11g2004 657 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 143 193 IPR017930 -
Sto11g2004 657 SUPERFAMILY Homeodomain-like 89 185 IPR009057 -
Sto11g2004 657 Gene3D - 37 91 - -
Sto11g2004 657 ProSiteProfiles Myb-like domain profile. 139 189 IPR001005 -
Sto11g2004 657 CDD SANT 43 86 IPR001005 -
Sto11g2004 657 Gene3D - 145 202 - -
Sto11g2004 657 ProSiteProfiles Myb-like domain profile. 87 138 IPR001005 -
Sto11g2004 657 SMART sant 143 191 IPR001005 -
Sto11g2004 657 SMART sant 91 140 IPR001005 -
Sto11g2004 657 SMART sant 39 88 IPR001005 -
Sto11g2004 657 PANTHER TRANSCRIPTION REPRESSOR MYB5 30 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g2004 Sto-Chr11 18836717 18844620 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g2004 37 194 MYB Transcription Factor Family AT5G02320 70.253 3.06e-76 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto11g2004 Myb_DNA-binding 7.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g2004 - - aprc:113869477 423.705