Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1999 ATGAATAAGGAGGAGGAGCCATCGAAGGTAGCTCTTGCAGCAAAGTGGAAGTACTGCATCGAAGGGAAGAAGGAAAGGTGTCGCGTTCTTGCAATGTCGGACTCACATTCATCTGTGGGTTCTGTTCGTAGAGGCCGCCATTGTTTCTGTGGTGAGATAGCAATTATTTTGACCTCCAGAACTCGGGAGAACCCAAGTAGACGCTTCTGGAGGTGCAAAAATTTTAAGagtGCATACGATTGTGACTTTTTCGATTGGATTGATCTACCTAGTATGGATGCAAAAGACATTACTATTAGAAGGCTGATAGTTAAGATATCCACACTCAATGGTGGTGTTGTCCCTTGTGCTGGTGCTGTCCTGGCAGCTAAGGATCTCACACGAGTAGTCTTGTACTTCATTGGGGATGAAAATGCCTTTGGTGCAGAGGAAGGTGAAGCAGTCgaaATCCTTCATTTTGGAGTTGGTAATGCCTCAGATTGTATGAGACCTCCCAAAGTCAAAACCATAACAGTTAGTCAATCGGGCAAAGCTCAATTCAAAACCATTCAATCTGCCATTGATGCTATCCCTTTACAAAACTCTCAATGGACTCAAATCCTAATTTCCTCGGGCATTTACAGAGAGATGGTCcgaattcaattaaaaaattgcATTTATCTAAAAGGAGCTGGTAGCAACTCTACCGTTCTGGAGTGGAATGGGCATTCGGGCTACTTAAAAAGTCCTACTATGCATATAAGAGGAAGTAACATTGTAGCAGAGGGCATTACTTTCATGAATACGTACAACGACCCCGTAGATGAATTTCACTTTTTGCCTGCTGAAGCTATTAGAATAGGGGGCGATAAATGTGCATTTTTTGATTGTGCATTTTTGGGAGTGCAAGACACACTGTTTGATCATCACGGGCGCCATTACTTCAAAAAGTGCTACATTCAAGGTGGAGTTGATTTCATATATGGGGATGGCCAATCTATCTATGAGGAATgtactattaagttttcaatgGGGAGAGAGGGTCCCCCAGAGCGAGGTGGATGTATAACAGCAAACAGGAGGCGTTCAGATCAAGATAGCACTGCTTTCGTGTTTAAAAATTGTACCATAACTGGGAATGGAAAAGGATTGGCTAGCCTTGGAAGAGCATATGGAGATCACTCTAGAGTCATCATAGCCAATTCTTTTCTAGGCGATGTCGTTGCACCCGCAGGCTGGGTGGCTTGGACTGGTGCTGGCCACGAGGGAAACCTAACGTACGTGGAGGAAGGATGCAAGGGACCAGGGGCAGATAAGTCAAAGCGTGTGCCTTGGATGAAGCACATGAGCACAAGAGAGCTTCAACAATTCATAGACATAGCATTCATCAATCAAGGAGGATGGATTGAGAAACTTCCCACACATTAA 1407 0.4314 MNKEEEPSKVALAAKWKYCIEGKKERCRVLAMSDSHSSVGSVRRGRHCFCGEIAIILTSRTRENPSRRFWRCKNFKSAYDCDFFDWIDLPSMDAKDITIRRLIVKISTLNGGVVPCAGAVLAAKDLTRVVLYFIGDENAFGAEEGEAVEILHFGVGNASDCMRPPKVKTITVSQSGKAQFKTIQSAIDAIPLQNSQWTQILISSGIYREMVRIQLKNCIYLKGAGSNSTVLEWNGHSGYLKSPTMHIRGSNIVAEGITFMNTYNDPVDEFHFLPAEAIRIGGDKCAFFDCAFLGVQDTLFDHHGRHYFKKCYIQGGVDFIYGDGQSIYEECTIKFSMGREGPPERGGCITANRRRSDQDSTAFVFKNCTITGNGKGLASLGRAYGDHSRVIIANSFLGDVVAPAGWVAWTGAGHEGNLTYVEEGCKGPGADKSKRVPWMKHMSTRELQQFIDIAFINQGGWIEKLPTH 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1999 468 PANTHER PECTINESTERASE 166 467 - -
Sto11g1999 468 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 166 467 - -
Sto11g1999 468 Pfam Pectinesterase 170 457 IPR000070 GO:0030599|GO:0042545
Sto11g1999 468 Gene3D - 167 467 IPR012334 -
Sto11g1999 468 Pfam GRF zinc finger 47 88 IPR010666 GO:0008270
Sto11g1999 468 SUPERFAMILY Pectin lyase-like 168 465 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1999 Sto-Chr11 18777070 18788537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1999 168 415 Carbohydrate Esterase AT2G19150 47.791 8.75e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1999 - - cam:101494460 359.762