Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1988 ATGGGCAAGGATCTGAGCGACGATCAGGTTGCTTCCATGAAGGAAGCCTTCACTCTCTTCGACACCGACAACGACGGCCGTATCGCCCCCTCCGAGCTCGGCATCCTCATGCGTTCCCTCGGCGGAAACCCCACCCAAGCGCAACTCAAGGCCATCATCGCCGAGGAGAATCTCACCGCCCCCTTCGATTTCGCCCGATTCCTCGAGCTCATGGGGAAGCACATGAAGGCCGAGCCCTTCGATAAGCAACTCCGCGACGCCTTCAAGGTCCTCGATAAGGACTCCAATGGCTCCGTCTCTGTCTCGGAGCTCAAGCACATTCTGACCAGTATTGGGGAGAAGCTCGAGCCGGCCGAGTTCGATGAGTGGATCAAGGAAGTCGATGTCGGTTCCGATGGCAAGATCCTTTATGAGGATTTCATTGCTAGAATGGTGGCTAATAAGGGAATTTCCGCCTCTGCTTTGCCCTACAAGAGAACGCCGCCTAGCTGGCTCAAGATCTCTTCGCAAGATGTTGAAGATAACATCTGCAAATTCGCCAAGAAGGGTTTGACGCCTTCGCAAATTGGTGTCATTCTCAGAGATTCTCACGGAATCGCTCAGGTTAAGAGCGTCACTGGGAACAAAATCTTGCGCATTCTCAAAGCTCacgGACTTGCGCCTGAAATCCCTGAGGATCTTTATCACTTGATCAAGAAGGCTGTTTCAATTCGCAAGCATCTTGAGAGGAATAGGAAGGACAAGGACTCCAAGTTCAGGTTGATTCTTGTGGAGAGCAGAATTCACCGACTTGCTCGCTATTACAAGAAAACTAAGAAGCTCCCACCAGTGTGGAAATATGAATCAACAACTGCCAGCACGCTGGTTGCTTAG 873 0.5143 MGKDLSDDQVASMKEAFTLFDTDNDGRIAPSELGILMRSLGGNPTQAQLKAIIAEENLTAPFDFARFLELMGKHMKAEPFDKQLRDAFKVLDKDSNGSVSVSELKHILTSIGEKLEPAEFDEWIKEVDVGSDGKILYEDFIARMVANKGISASALPYKRTPPSWLKISSQDVEDNICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1988 290 ProSiteProfiles EF-hand calcium-binding domain profile. 115 150 IPR002048 GO:0005509
Sto11g1988 290 Hamap 30S ribosomal protein S15 [rpsO]. 142 288 IPR023029 -
Sto11g1988 290 Gene3D - 3 78 - -
Sto11g1988 290 SMART efh_1 83 111 IPR002048 GO:0005509
Sto11g1988 290 SMART efh_1 12 40 IPR002048 GO:0005509
Sto11g1988 290 SMART efh_1 119 147 IPR002048 GO:0005509
Sto11g1988 290 CDD EFh 14 55 IPR002048 GO:0005509
Sto11g1988 290 Gene3D - 222 290 - -
Sto11g1988 290 ProSitePatterns Ribosomal protein S15 signature. 237 267 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sto11g1988 290 ProSiteProfiles EF-hand calcium-binding domain profile. 79 114 IPR002048 GO:0005509
Sto11g1988 290 ProSitePatterns EF-hand calcium-binding domain. 92 104 IPR018247 -
Sto11g1988 290 PANTHER 40S RIBOSOMAL PROTEIN S13 146 290 - -
Sto11g1988 290 CDD Ribosomal_S15p_S13e 209 282 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sto11g1988 290 Pfam Ribosomal protein S15 213 283 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sto11g1988 290 Gene3D - 79 154 - -
Sto11g1988 290 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Sto11g1988 290 SMART Ribosomal_S15_2 209 288 IPR000589 GO:0003735|GO:0005840|GO:0006412
Sto11g1988 290 Pfam EF-hand domain 13 41 IPR002048 GO:0005509
Sto11g1988 290 Pfam Ribosomal S13/S15 N-terminal domain 146 199 IPR012606 GO:0003735|GO:0005840|GO:0006412
Sto11g1988 290 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Sto11g1988 290 SUPERFAMILY S15/NS1 RNA-binding domain 205 281 IPR009068 -
Sto11g1988 290 SUPERFAMILY EF-hand 5 144 IPR011992 -
Sto11g1988 290 Pfam EF-hand domain pair 82 144 IPR002048 GO:0005509
Sto11g1988 290 Gene3D - 174 221 - -
Sto11g1988 290 SMART Ribosomal_S13_N_2 142 199 IPR012606 GO:0003735|GO:0005840|GO:0006412
Sto11g1988 290 CDD EFh 83 144 IPR002048 GO:0005509
Sto11g1988 290 PANTHER RIBOSOMAL PROTEIN S15P/S13E 146 290 IPR023029 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1988 Sto-Chr11 18656771 18668447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1988 147 290 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 92.361 1.04e-94 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1988 K02953 - ats:109750469 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto11g1988 11 18656771 18668447 Sto11g1988 11 18656771 18668447 ECH