Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1970 TTGTTGGGTGTGAGACATTTGCTTACTTACAGTGTGGATGATATGGGAAGGCAACCTTGCTGTGACAAACTTGAAGTGAAGAAAGGACCATGGACTGCTGATGAAGACAAGAAGCTCATCAATTTCCTTCTCACCAATGGTCAGTGCTGCTGGCGAGCTGTTCCCAAGCTTGCTGGCTTAAGGCGTTGTGGCAAAAGTTGCAGGCTTCGTTGGACTAACTATCTTCGTCCTGACTTGAAGAGAGGCCTCCTCACTGAAACAGAAGAGCAGATTGTTATTGATCTCCATTCTCGTCTTGGAAACAGGAGCACTCATGGGTTGCTTTGTGTTAGGTGGTCCATGATAGCTGCCAAATTACCAGGAAGAACGGACAATGAGATTAAGAATCATTGGAACACCCACATCAAGAAAAAGCTGCTTAAGATGGGTATTGATCCCATTACTCATGAGCCTCTCAACAAGCAAGCTGCATCCCAGGAAAACTCATCCCCTGCATCACAGCATTTCACACAATCTGACAATAACCATCAAGTAGAGGAAACTGATGGGGTTCTTAATTCTGAGGAGAATTCAGTCTCATCGCCTACTGGGGATAATGAATCCCTTTTGCCAGATAGCATTTGCAGCGATGACTCTCTCATGAACAGCTTGTGGCTGGACCAAACTTCACTGATGGATGCATTATGGGCAAGTATACCTGAACCTGACgcagagaataataataatgaaaatgacATGCCACTATCATCTTGGGAGGATAATAGTGCTTGGTTATTGGATTCTAAGGACTTTGGTGTTCATGATTTTGGTTTTAACTGTTTCAGCGAGATTGAGTCAAGTACACTGCAAACATTAGGTATGGAGGAGAAGGGGCAATAG 879 0.4323 LLGVRHLLTYSVDDMGRQPCCDKLEVKKGPWTADEDKKLINFLLTNGQCCWRAVPKLAGLRRCGKSCRLRWTNYLRPDLKRGLLTETEEQIVIDLHSRLGNRSTHGLLCVRWSMIAAKLPGRTDNEIKNHWNTHIKKKLLKMGIDPITHEPLNKQAASQENSSPASQHFTQSDNNHQVEETDGVLNSEENSVSSPTGDNESLLPDSICSDDSLMNSLWLDQTSLMDALWASIPEPDAENNNNENDMPLSSWEDNSAWLLDSKDFGVHDFGFNCFSEIESSTLQTLGMEEKGQ 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1970 292 Pfam Myb-like DNA-binding domain 85 134 IPR001005 -
Sto11g1970 292 Pfam Myb-like DNA-binding domain 28 75 IPR001005 -
Sto11g1970 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 76 139 IPR017930 -
Sto11g1970 292 Gene3D - 25 81 - -
Sto11g1970 292 ProSiteProfiles Myb-like domain profile. 76 135 IPR001005 -
Sto11g1970 292 MobiDBLite consensus disorder prediction 154 206 - -
Sto11g1970 292 SUPERFAMILY Homeodomain-like 26 131 IPR009057 -
Sto11g1970 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 23 75 IPR017930 -
Sto11g1970 292 PANTHER PROTEIN ODORANT1-LIKE 16 277 - -
Sto11g1970 292 SMART sant 27 77 IPR001005 -
Sto11g1970 292 SMART sant 80 137 IPR001005 -
Sto11g1970 292 CDD SANT 30 75 IPR001005 -
Sto11g1970 292 Gene3D - 85 139 - -
Sto11g1970 292 ProSiteProfiles Myb-like domain profile. 23 75 IPR001005 -
Sto11g1970 292 CDD SANT 85 135 IPR001005 -
Sto11g1970 292 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 16 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1970 Sto-Chr11 18542797 18544113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1970 15 284 MYB Transcription Factor Family AT4G12350 53.767 9.11e-96 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto11g1970 Myb_DNA-binding 6.9e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1970 K09422 - gmx:100800360 415.231