Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto11g1939 ATGGCGGtgtattataaatttaagagtGCAAGAGATTATGATTCAATTCCCATGGACGGTCCTTTCATCTCTGTTGGTacattgaaagaaaaaatttttGATTCCAAGCATTTAGGCAGGGGTACTGATTTCGACCTTCTGGTCACCAACGCCCAGACCAATGAAGAATATCTTGATGAAGCAATGTTGATACCTAAAAATACCTCAGTGTTAATTCGTCGAGTTCCAGGACGGCCACGTTTACCAATTGTTACTGAACAAGTACAAAAGGTGGAAAATAACGGGGTGGAGATTGAGCCCGAAAACAGTAGCTTACCAGCTGTTGATACCTCTGCCATGAAATATTCTGAAGACTCGGAATGGGATGAATTTGGCAATGAGTTGTATGCAATTCCAGATGTACTGCCTGTTCAATCAAGCAACTTAATTCCAGAGGCTCCTCCGACAACAAATAAAGCGGATGAAGACAGTAAGATTAAGGCCTTGATTGATACCCCAGCCTTGGATTGGCAAAGGCAAGGTCCTGATGGCTTTGGCCTTGGTAGAGGTTTTGGAAGGGGTATGGGTGGGCGGATGGCCGGAGGACGTGGTTTTGGGTTGCAGCAGAAAACACCTCCACAAGGCTATGTGTGTCACAGATGCAAGGTGCCTGGACATTTTATTCAGCACTGCCCTACAAATGGTGATCCAAATTATGACATCAAAAGAGTGAAGCCCCCCACTGGTATTCCGAGATCCATGCTTATTGCAGCTGCAGATGGTTCCTATGCTTTACCAACCGGTGATGTAGCTGTATTGAAGCCAAACGAGGCTGCTTTTGAGAAAGAAATAGAAGGCTTGCCATCAACACGTTCTGTTAGTGATCTTCCACCTGAACTTTGCTGCCCCTTGTGCAAGGACGTAATGAAAGATGCTGTGTTAACAAGCAAGTGTTGTTTCACAAGTTTCTGTGACAAATGTATTAGGGACTTCATTATCTCCAAGTCCATGTGCACATGTGGTGCAGCTAATATTCTTGCAGACGATCTTTTACCAAACAAGACACTAAGAGTTGCAATTAAACGCATAATGGAGGCAGGCAACAGCAGTGCTGATAATGCTGGGAGTACATTTCAAGTTCAAGATATGGAGTCCGCTCGCTGTCCACAGCCTAAGATTCCTTCTCCGACCTCTTCTGCTGTCTCTAAGGGAGAACAAAAGGTGTCACCTGCTAATGAAGGAAAAACAGAAGTTCCTGAGGCAGTTGATGAAAAGAAAGCTGTTTCTGCCCCACAGCCGACATTAGAAGAAGTAAGGGCCACCAGAGCTGCTGATGTATCTGAAGCTACTCATGAGTCAATGAGTGTAAAGGAACCTGCCTCACAAGGTAGTGCTCCGCTGGTTGAGGAAGAAGTACAGCAGAAGTTAGCTCCTAGTGAGGCAGctaagaaaaagaaaaagaagaaagccCGCTTACCTGCAACTGACTTGCAGTGGAAAACCCCACAAGACTTTGGACACGAGAATTATATGATGCCTATGGGCCCACCTCCTGGCTATAATCCATATTGGAATGGCATGCAAACAGGCATGGAAGGATTTGTGGCACCATATGCAGGCACAATGCAAATGATGGGTTATGGCCTAGGACCCTTAGACATGCCCTTTGGTAATGTGATGCCTCATGATCCCTTTGGCATGCAGAATTATATGTTGCCTGTTGTCCCACCTCCGAGGGATCTTGCGGACTTCAGTATGGGCATGAATGCTCCACCTCCAATTATGAGTAGAGAGCAGTTTGAAGCTCGGAAAGCTGATCTCAGGAGGAAGCGTGAAATTGAGAGACGGGGGGAAAGGGATTTCGCTAAAGATCGGGATTTTGGTAGAGAGGTGAGCAGCACTGGGGATGTTTCTTCAGTGAAATCTAAACCTAAGCCGCTTCCTCCCTCATCAAGTAACGTGCACAACCATCACCACCGTAACCGTACGGAGCGATTATCGCCGGAACGATCTTCGCGTGAGGTAGAACCTTCACGTCCGGCCAAAAGAAAATCTGAGCACCACCTCGATCGCGACCGCGAACGTGACTACGACCATGACCGAGACAGAGAGTCAGAGTCTTCATCAAGGCCCTCCTCTGAGCCGGCGGCCAAGACCTCTTCCTCCACCACCTCAGCGGCGGCCGCAGCTGCCGCAGCAGCTGCCGCAGAGCGCAAGCATAAGGCCAGCGTCTTCTCTCGTATAAGCTTCCCCGAGGGGGAAGTCTCTAAGAAGAGAAAGATGTCGACATCTTCTTCAACCGAACCAGCCGGTGCGACGGTGACTTCGTCGCATCACAAGGCAGCATCGAACGGGTATTACGATGATTACAAATCGAAGAGTAGTGTGGATTACGAATCCAGCGATGAAGAACGGCATTTCAAAAGAAGGCCGTCTAGGTACGAGCCGTCTCCTTCACCGCCACCACAGGGAGATTGGGAGGAGGAAGGAAGGCATAAGCTAGGTGCCTACAAGTATGTGTCCGAGCTTTGGCGCAAGAAGCAGTCCGATGTCATGAGATTCTTGCAGAGGGTGAGGTGCTGGGAGTACCGTCAGCAACCTTCTATTGTGCGTTTGACACGGCCTACTCGTCCTGATAAGGCTCGTCGATTGGGTTATAAAGCTAAGCAGGGTTATGTGGTTTATCGTGTTCGTGTTCGGAGGGGTGGCCGAAAGAGACCAGTTCCTAAAGGTATTGTATATGgtaagcccacaaatcaaggtgtTACCCAACTCAAGTTTCAGCGCAGCAAGAGGTCCGTTGCTGAGGAGCGTGCTGGTCGGAAACTTGGTGGCCTTAGGGTCCTCAATTCTTACTGGGTCAATGAGGACTCGACCTACAAATACTTTGAGATAATCTTGGTGGATGCTGCTCACAATGCTATCAGAAATGATCCCAGGATTAATTGGCTCTGCAATCCTGTCCACAAACACAGGGAGCTTCGTGGTCTCACATCTGCTGGTAAAAAATACAGAGGCCTACGGGGAAGAGGACACCTCCACCACAAAGCACGCCCATCTCGCAGGGCAACATGGAAGAGAAACAATACCCTTTCCCTCCGTCGCTACCGTTGA 3093 0.4749 MAVYYKFKSARDYDSIPMDGPFISVGTLKEKIFDSKHLGRGTDFDLLVTNAQTNEEYLDEAMLIPKNTSVLIRRVPGRPRLPIVTEQVQKVENNGVEIEPENSSLPAVDTSAMKYSEDSEWDEFGNELYAIPDVLPVQSSNLIPEAPPTTNKADEDSKIKALIDTPALDWQRQGPDGFGLGRGFGRGMGGRMAGGRGFGLQQKTPPQGYVCHRCKVPGHFIQHCPTNGDPNYDIKRVKPPTGIPRSMLIAAADGSYALPTGDVAVLKPNEAAFEKEIEGLPSTRSVSDLPPELCCPLCKDVMKDAVLTSKCCFTSFCDKCIRDFIISKSMCTCGAANILADDLLPNKTLRVAIKRIMEAGNSSADNAGSTFQVQDMESARCPQPKIPSPTSSAVSKGEQKVSPANEGKTEVPEAVDEKKAVSAPQPTLEEVRATRAADVSEATHESMSVKEPASQGSAPLVEEEVQQKLAPSEAAKKKKKKKARLPATDLQWKTPQDFGHENYMMPMGPPPGYNPYWNGMQTGMEGFVAPYAGTMQMMGYGLGPLDMPFGNVMPHDPFGMQNYMLPVVPPPRDLADFSMGMNAPPPIMSREQFEARKADLRRKREIERRGERDFAKDRDFGREVSSTGDVSSVKSKPKPLPPSSSNVHNHHHRNRTERLSPERSSREVEPSRPAKRKSEHHLDRDRERDYDHDRDRESESSSRPSSEPAAKTSSSTTSAAAAAAAAAAAERKHKASVFSRISFPEGEVSKKRKMSTSSSTEPAGATVTSSHHKAASNGYYDDYKSKSSVDYESSDEERHFKRRPSRYEPSPSPPPQGDWEEEGRHKLGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIILVDAAHNAIRNDPRINWLCNPVHKHRELRGLTSAGKKYRGLRGRGHLHHKARPSRRATWKRNNTLSLRRYR 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto11g1939 1030 Gene3D Ribosomal protein l15e 827 1030 IPR024794 GO:0003735|GO:0005840
Sto11g1939 1030 Pfam Zinc knuckle 206 226 IPR025829 -
Sto11g1939 1030 SUPERFAMILY Retrovirus zinc finger-like domains 195 229 IPR036875 GO:0003676|GO:0008270
Sto11g1939 1030 MobiDBLite consensus disorder prediction 755 775 - -
Sto11g1939 1030 PANTHER E3 UBIQUITIN LIGASE PQT3-LIKE 1 811 - -
Sto11g1939 1030 Pfam Ribosomal L15 828 1016 IPR000439 GO:0003735|GO:0005840|GO:0006412
Sto11g1939 1030 MobiDBLite consensus disorder prediction 703 721 - -
Sto11g1939 1030 MobiDBLite consensus disorder prediction 612 822 - -
Sto11g1939 1030 MobiDBLite consensus disorder prediction 655 702 - -
Sto11g1939 1030 MobiDBLite consensus disorder prediction 582 601 - -
Sto11g1939 1030 SUPERFAMILY RING/U-box 284 358 - -
Sto11g1939 1030 ProSiteProfiles DWNN domain profile. 3 76 IPR014891 GO:0008270
Sto11g1939 1030 MobiDBLite consensus disorder prediction 384 399 - -
Sto11g1939 1030 Gene3D - 203 253 - -
Sto11g1939 1030 MobiDBLite consensus disorder prediction 374 486 - -
Sto11g1939 1030 SMART Ribosomal_L15e_2 828 1019 IPR000439 GO:0003735|GO:0005840|GO:0006412
Sto11g1939 1030 MobiDBLite consensus disorder prediction 625 647 - -
Sto11g1939 1030 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 827 1021 IPR012678 GO:0003735|GO:0005840|GO:0006412
Sto11g1939 1030 Pfam DWNN domain 3 76 IPR014891 GO:0008270
Sto11g1939 1030 CDD vRING-HC-C4C4_RBBP6 290 333 - -
Sto11g1939 1030 SMART DWNN_2 3 76 IPR014891 GO:0008270
Sto11g1939 1030 ProSitePatterns Ribosomal protein L15e signature. 872 895 IPR020925 GO:0003735|GO:0005840|GO:0006412
Sto11g1939 1030 PANTHER RETINOBLASTOMA-BINDING PROTEIN 6 1 811 IPR033489 GO:0006397|GO:0016567|GO:0061630
Sto11g1939 1030 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 372 IPR013083 -
Sto11g1939 1030 MobiDBLite consensus disorder prediction 785 806 - -
Sto11g1939 1030 Gene3D - 1 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto11g1939 Sto-Chr11 18107229 18134042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto11g1939 827 1030 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 91.667 1.70e-119 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto11g1939 - K10624 gmx:100798536 1103.58